RE: Simultaneous drug and metabolite POPPK
Dear Vijai,
An example of a model fitted to log-transformed plasma concentrations of a
parent drug and its active metabolite (cf. extended model in European Journal
of Clinical Pharmacology 2002;58(4) Suppl:S1-S67.):
Program code:
$PROBLEM Parent drug & active metabolite
$INPUT ID AMT TIME RATE EVID CMT DV
$DATA XXXXX.prn IGNORE=#
$SUBROUTINES ADVAN5
$MODEL
COMP=(DEFOBS1); central compartment of parent drug
COMP=(PERIPH1); peripheral compartment of parent drug
COMP=(PERIPH2); peripheral compartment of parent drug
COMP=(DEFOBS2); central compartment of metabolite
COMP=(PERIPH3); peripheral compartment of parent drug
COMP=(PERIPH4); peripheral compartment of parent drug
COMP=(PERIPH5); compartment of intermediary metabolites between parent drug
and active metabolite
$PK
;----------------------------------------------------------------------------
;BASIC PK OF PARENT DRUG (observations after two intravenous infusions given 12
h apart)
;----------------------------------------------------------------------------
K10=THETA(1)*(1+ETA(1))
K12=THETA(2)*(1+ETA(2))
K21=THETA(3)*(1+ETA(3))
K13=THETA(4)*(1+ETA(4))
K31=THETA(5)*(1+ETA(5))
;----------------------------------------------------------------------------
;BASIC PK OF ACTIVE METABOLITE (observations after two intravenous infusions
given 12 h apart or after two intravenous infusions of the parent drug given 12
h apart)
;----------------------------------------------------------------------------
K40=THETA(6)*(1+ETA(6))
K45=THETA(7)*(1+ETA(7))
K54=THETA(8)*(1+ETA(8))
K46=THETA(9)*(1+ETA(9))
K64=THETA(10)*(1+ETA(10))
;----------------------------------------------------------------------------
;VOLUMES OF DISTRIBUTION
;----------------------------------------------------------------------------
S1 =THETA(11)*(1+ETA(11))
S4 =THETA(11)*(1+ETA(11)); joint estimate for parent drug and active metabolite
;----------------------------------------------------------------------------
;SYSTEMIC GENERATION OF ACTIVE METABOLITE
;----------------------------------------------------------------------------
K74=THETA(12)*(1+ETA(12)); transformation of intermediary to active metabolite
K17=THETA(13)*(1+ETA(13)); transformation of parent drug to intermediary
metabolite
;----------------------------------------------------------------------------
$ERROR
IF (EVID.EQ.0.AND.F.GT.0) THEN
IPRED=LOG(F)
ELSE
IPRED=LOG(F+1)
ENDIF
IRES=DV-IPRED
IWRES=IRES
X1=0
X2=0
IF(CMT.EQ.1)X1=1; flag for parent drug observation(CMT=1)
IF(CMT.EQ.4)X2=1; flag for active metabolite observation(CMT=4)
Y=IPRED+X1*EPS(1)+X2*EPS(2)
.....
Data file XXXX.prn, first subject
# ID AMT TIME RATE EVID CMT DV
1 2214 0 27675 4 1 XXX
1 . 0.08 . 0 1 XXX
1 . 0.25 . 0 1 XXX
1 . 0.5 . 0 1 XXX
1 . 0.999 . 0 1 XXX
1 . 0.999 . 0 4 YYY
1 2208 1 27600 1 1 .
1 . 1.08 . 0 1 XXX
1 . 1.08 . 0 4 YYY
1 . 1.25 . 0 1 XXX
1 . 1.25 . 0 4 YYY
1 . 1.5 . 0 1 XXX
1 . 1.5 . 0 4 YYY
1 . 2 . 0 1 XXX
1 . 2 . 0 4 YYY
1 . 2.5 . 0 1 XXX
1 . 2.5 . 0 4 YYY
1 . 3 . 0 1 XXX
1 . 3 . 0 4 YYY
1 . 4 . 0 1 XXX
1 . 4 . 0 4 YYY
1 . 6 . 0 4 YYY
1 . 8 . 0 1 XXX
1 . 8 . 0 4 YYY
1 . 9 . 0 4 YYY
1 . 12 . 0 4 YYY
1 . 15 . 0 1 XXX
1 . 15 . 0 4 YYY
1 . 21 . 0 4 YYY
1 . 43 . 0 4 YYY
1 756 0 9450 4 4 .
1 . 0.08 . 0 4 YYY
1 . 0.25 . 0 4 YYY
1 . 0.5 . 0 4 YYY
1 . 0.999 . 0 4 YYY
1 762 1 9525 1 4 .
1 . 1.08 . 0 4 YYY
1 . 1.25 . 0 4 YYY
1 . 1.5 . 0 4 YYY
1 . 2 . 0 4 YYY
1 . 2.5 . 0 4 YYY
1 . 3 . 0 4 YYY
1 . 4 . 0 4 YYY
1 . 8 . 0 4 YYY
1 . 15 . 0 4 YYY
1 . 21 . 0 4 YYY
1 . 31 . 0 4 YYY
/ Johan
> Johan Rosenborg
> Senior Pharmacokineticist, Clinical Pharmacology
> Medical Science Sweden
> AstraZeneca R&D Lund
> SE-221 87 Lund, Sweden
Tel: +46 46 33 65 99
Quoted reply history
-----Original Message-----
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] Behalf Of Vijay V. Upreti
Sent: 12 februari 2007 19:20
To: [email protected]
Subject: [NMusers] Simultaneous drug and metabolite POPPK
Dear NMusers,
I have plasma concentration versus time data for a drug and its active
metabolite. I would like to simulataneously fit this drug and its metabolite
using NONMEM to obtain estimates of prameters and associated variability for
both drug and its active metabolite. I am sure guys have done this nicely in
past. I was wondering if someone can share a control stream and sample data
for my guidance.
Thanks
_______________
Vijay V Upreti
PhD Candidate
Pharmacokinetics-Biopharmaceutics Laboratory
Dept. of Pharmaceutical Sciences
University of Maryland, School of Pharmacy
Rm S509, 20 Penn St., Baltimore, MD 21201
Voice: 410.706.7388; Fax: 410.706.5017