Suitable subject headers
Hello all:
I would like to remind everyone using nmusers to place appropriate subject
headers so that the archived e-mails can be easily searched for content.
For example, the most recent e-mail under
RE: [NMusers] single-patient AUC
(see e-mail trail below)
has nothing to do with singe-patient AUC, but with another very useful piece of
information regarding NONMEM's .xml output file
Robert J. Bauer, Ph.D.
Vice President, Pharmacometrics, R&D
ICON Development Solutions
7740 Milestone Parkway
Suite 150
Hanover, MD 21076
Tel: (215) 616-6428
Mob: (925) 286-0769
Email: [email protected]
Web: www.iconplc.com
Quoted reply history
-----Original Message-----
From: [email protected] [mailto:[email protected]] On
Behalf Of [email protected]
Sent: Tuesday, September 04, 2012 9:29 AM
To: [email protected]; [email protected]
Subject: RE: [NMusers] single-patient AUC
Shirley,
An interesting new possibility is the xml output. Using the XML package from
CRAN, this can be read in R as follows:
library(XML)
x <- xmlTreeParse("yourmodel.xml", getDTD=F)
r <- xmlRoot(x)
To see what is there:
names(r[['nonmem']][['problem']][['estimation']])
So for example:
xmlValue(r[['nonmem']][['problem']][['estimation']][['final_objective_function']])
Best regards,
Erik
________________________________________
From: [email protected] [[email protected]] on behalf of
Hou, Xiaoli Shirley [[email protected]]
Sent: Sunday, September 02, 2012 11:49 PM
To: NONMEM
Subject: RE: [NMusers] single-patient AUC
Dear NM-Users,
I am doing a simulation using R, in which the within and between subject
variations, "EPSILON" and "OMEGA", are needed. They are automatically listed in
the ***.lst file of the NONMEM outputs. Is there a way I can read them from my
NONMEM output into R?
Thanks,
Shirley
Dr. Xiaoli Shirley Hou
Senior Biometrician, ECDS
351 N. Sumneytown Pike, UG1C36
North Wales, PA. 19454.
Phone (540) 381-9599
Fax (267) 305-6395
VoiceMailBox (800) 737-2088 ext 68134
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