metabolite modelling
From: "Wixley, Dick" <Dick.Wixley@solvay.com>
Subject: metabolite modelling
Date: Thu, 9 Dec 1999 15:49:59 +0100
Dear users,
I am trying to simultaneously model parent compound and metabolite. Oral dosing - a 2-compartment model describes the parent compound well. I have used the following code. It converged but took a long time but I was not impressed with the results.
I would be interested in references on how to taCkle this problem. My next step will be to do a sequential fit. I am concerned that I may be making some basic errors in my model definition.
Many thanks for your help.
Dick Wixley
$PROBLEM metabolite and parent compound
$INPUT
SUBJ=ID DOSE=AMT TIME CPLA=DV TRT EVID MDV MDD QT PR CMT
$DATA y:\a_pk_pd\ted_ver\data\nmnor1\NOR2sim IGNORE=C
$SUBROUTINES ADVAN7
$MODEL
COMP = (DEPOT DEFDOSE INITIALOFF)
COMP = (CENTRAL DEFOBS)
COMP = PERIPH
COMP = (METAB )
$PK
K12 =THETA(1)*EXP((ETA(1)))
K23 =THETA(2)*EXP((ETA(2)))
K32 =THETA(3)*EXP((ETA(3)))
K24 =THETA(4)*EXP((ETA(4)))
K40 =THETA(5)*EXP((ETA(5)))
K20 =THETA(6)*EXP((ETA(6)))
V2 =THETA(7)*EXP((ETA(7)))
V4 =THETA(8)*EXP((ETA(8)))
S2=V2 /1000
s4=V4/1000
ALAG1 = THETA(9)*EXP(ETA(9))
$ERROR
FX=0
IF(F.EQ.0) FX=1
W=F+FX
IF (CMT.EQ.4) THEN
Y = F*EXP(ERR(2))
ELSE
Y = F*EXP(ERR(1))
ENDIF
IPRED=F
IRES=DV-IPRED
IWRES=IRES/W
$THETA (0,3.4) (0,.24) (0,.13) (0,.27) (0,.13)
(0,21) (0,290) (0,0.9) (0,0.5)
$OMEGA 0.25 0.25 0.25 0.25 0.25
0.25 0.25 0.25 0.25
$SIGMA 0.25 0.25
$ESTIMATION MAXEVAL=9999 PRINT=5 SIGDIGITS=4 POSTHOC MSFO=RUN5I.MSF
$COVARIANCE
$TABLE ID TIME DOSE ALAG1 K12 K23 K32 K24 K40 K20 V2 V4 CMT IPRED DV PR QT
NOPRINT FILE=rmetab2 ONEHEADER