Dear all,
I have found a negtive ETA shrinkage result in my model output. I did a
simple simulation with 1-compartement model via iv bolus administration, and
then refitted the simulated data with the same model and initial values. In
the NONMEM output (of NONMEM 7), I got ETAshrink(%): -2.0123E-01
-2.3271E-01. From the definition of ETA shrinkage: 1-SD(eta*)/omega, eta* is
the EBE estimated eta, there is no constraint preventing ETA shrinkage going
below zero. Could somebody give me an interpretation of negtive ETA
shrinkage?
Thanks in advance!
Maurice
negative ETA shrinkage
4 messages
4 people
Latest: Sep 06, 2010
Dear Maurice,
Negative shrinkage means that your SD is bigger than your estimated omega. And your negative shrinkage is near 0 (<-1%). Therefore, I would take it for a null shrinkage.
Best Regards,
David
Chenguang Wang a écrit :
> Dear all,
>
> I have found a negtive ETA shrinkage result in my model output. I did a simple simulation with 1-compartement model via iv bolus administration, and then refitted the simulated data with the same model and initial values. In the NONMEM output (of NONMEM 7), I got ETAshrink(%): -2.0123E-01 -2.3271E-01. From the definition of ETA shrinkage: 1-SD(eta*)/omega, eta* is the EBE estimated eta, there is no constraint preventing ETA shrinkage going below zero. Could somebody give me an interpretation of negtive ETA shrinkage? Thanks in advance! Maurice
Hi Maurice,
While using NM7, it also depends on what estimation method was used ... for
eg. the SAEM method sometime outputs incorrect shrinkage values. (this is
also mentioned in the intro supplement to NM7).
Did you try to manually estimate shrinkage using the individual omega values
? Does that still result in negative estimates ?
I have also noted negative shrinkage values while using other methods in
NM7..... but if I estimate them manually they are different from what is
reported in NM7 output and positive. PsN estimates the shrinkage using the
individual Omega values and reports it (example in NM6) but with NM7, PsN
reports shrinkage values calculated by NM7.
Hope this is of some help.
Regards
Navin
Quoted reply history
On Sun, Sep 5, 2010 at 8:19 AM, David Ternant <[email protected]> wrote:
> Dear Maurice,
>
> Negative shrinkage means that your SD is bigger than your estimated omega.
> And your negative shrinkage is near 0 (<-1%). Therefore, I would take it for
> a null shrinkage.
>
> Best Regards,
>
> David
>
> Chenguang Wang a écrit :
>
> Dear all,
>> I have found a negtive ETA shrinkage result in my model output. I did a
>> simple simulation with 1-compartement model via iv bolus administration, and
>> then refitted the simulated data with the same model and initial values. In
>> the NONMEM output (of NONMEM 7), I got ETAshrink(%): -2.0123E-01
>> -2.3271E-01. From the definition of ETA shrinkage: 1-SD(eta*)/omega, eta* is
>> the EBE estimated eta, there is no constraint preventing ETA shrinkage going
>> below zero. Could somebody give me an interpretation of negtive ETA
>> shrinkage?
>> Thanks in advance!
>> Maurice
>>
>
>
>
>
--
Navin Goyal
Navin:
Could you please send me an example of where your manually evaluated eta
shrinkage differs from that outputted by NM7?
Robert J. Bauer, Ph.D.
Vice President, Pharmacometrics
ICON Development Solutions
Tel: (215) 616-6428
Mob: (925) 286-0769
Email: [email protected]
Web: www.icondevsolutions.com
Quoted reply history
________________________________
From: [email protected] [mailto:[email protected]] On
Behalf Of Navin Goyal
Sent: Sunday, September 05, 2010 11:52 AM
To: Chenguang Wang; [email protected]
Subject: Re: [NMusers] negative ETA shrinkage
Hi Maurice,
While using NM7, it also depends on what estimation method was used ... for eg.
the SAEM method sometime outputs incorrect shrinkage values. (this is also
mentioned in the intro supplement to NM7).
Did you try to manually estimate shrinkage using the individual omega values ?
Does that still result in negative estimates ?
I have also noted negative shrinkage values while using other methods in
NM7..... but if I estimate them manually they are different from what is
reported in NM7 output and positive. PsN estimates the shrinkage using the
individual Omega values and reports it (example in NM6) but with NM7, PsN
reports shrinkage values calculated by NM7.
Hope this is of some help.
Regards
Navin
On Sun, Sep 5, 2010 at 8:19 AM, David Ternant <[email protected]> wrote:
Dear Maurice,
Negative shrinkage means that your SD is bigger than your estimated
omega. And your negative shrinkage is near 0 (<-1%). Therefore, I would take it
for a null shrinkage.
Best Regards,
David
Chenguang Wang a écrit :
Dear all,
I have found a negtive ETA shrinkage result in my model output.
I did a simple simulation with 1-compartement model via iv bolus
administration, and then refitted the simulated data with the same model and
initial values. In the NONMEM output (of NONMEM 7), I got ETAshrink(%):
-2.0123E-01 -2.3271E-01. From the definition of ETA shrinkage:
1-SD(eta*)/omega, eta* is the EBE estimated eta, there is no constraint
preventing ETA shrinkage going below zero. Could somebody give me an
interpretation of negtive ETA shrinkage?
Thanks in advance!
Maurice
--
Navin Goyal