Dear NMusers,
I'm trying to run a control stream using NONMEM6. Minimization was successful
but there is one error message RMATX -1. I get the output file with obj values
and other estimates but I don't have the table file. My table record is posted
below:
$TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
I searched the archive and add the carriage return to the $table record and
still got no tables.
Is it has something to do with this error message? Any suggestion is
appreciated.
Jing
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missing table file
7 messages
4 people
Latest: Jan 21, 2010
Jing,
It appears that you ran this using Wings for NONMEM. Have you tried running using nmfe6 or nmfe7?
Matt.
Quoted reply history
________________________________
From: Jing Nie [mailto:hollidayy
Sent: Wednesday, January 20, 2010 4:00 PM
To: Fidler,Matt,FORT WORTH,R&D
Subject: RE: [NMusers] missing table file
Matt,
The NONMEM output I got as following:
THETA: KOUT SMAX SC50
ETA: BSVKOUT BSV_SMAX BSV_SC50
ERR:
1drA_amt.lst 257.613 evalC0 sig=3.3 subS obsS CCIL=YNYN NVI1.2 PV1.0
THETA = 0.0538 0.337 346
ETASD = 0 1.01489 22.2711
ERRSD = 5.46809
MINIMIZATION SUCCESSFUL
P VAL.: 0.68E+00 0.11E-01 0.52E+00
ERROR RMATX- 1
the run is able to generate .smy, .smr,.ctl and MASM listing file but no table.
Jing
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________________________________
From: Matt.Fidler
To: hollidayy
Date: Wed, 20 Jan 2010 15:48:59 -0600
Subject: RE: [NMusers] missing table file
Jing,
Please post all of your nonmem output.
Matt.
________________________________
From: owner-nmusers
On Behalf Of Jing Nie
Sent: Wednesday, January 20, 2010 1:01 PM
To: nmusers
Subject: [NMusers] missing table file
Dear NMusers,
I'm trying to run a control stream using NONMEM6. Minimization was successful but there is one error message RMATX -1. I get the output file with obj values and other estimates but I don't have the table file. My table record is posted below:
$TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
I searched the archive and add the carriage return to the $table record and still got no tables.
Is it has something to do with this error message? Any suggestion is appreciated.
Jing
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Thank you.
________________________________
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Thank you.
Matt,
WFN would not affect whether NONMEM decides to output a table file.
I have never seen the error message RMATX- 1. Some errors will stop
NONMEM from producing a table file.
Jing,
There is no such thing as a MASM listing file. I suspect you are talking
about the raw NONMEM output file with the extension .lst.
Please look at the .lst file in the run folder. You should find more
information there about the error and perhaps some indication of why it
happened.
Nick
Fidler,Matt,FORT WORTH,R&D wrote:
> Jing,
>
> It appears that you ran this using Wings for NONMEM. Have you tried
> running using nmfe6 or nmfe7?
>
> Matt.
>
> ------------------------------------------------------------------------
> *From:* Jing Nie [mailto:hollidayy
> *Sent:* Wednesday, January 20, 2010 4:00 PM
> *To:* Fidler,Matt,FORT WORTH,R&D
> *Subject:* RE: [NMusers] missing table file
>
> Matt,
>
> The NONMEM output I got as following:
>
> THETA: KOUT SMAX SC50
> ETA: BSVKOUT BSV_SMAX BSV_SC50
> ERR:
>
> 1drA_amt.lst 257.613 evalC0 sig=3.3 subS obsS CCIL=YNYN
> NVI1.2 PV1.0
> THETA = 0.0538 0.337 346
> ETASD = 0 1.01489 22.2711
> ERRSD = 5.46809
>
> MINIMIZATION SUCCESSFUL
>
> P VAL.: 0.68E+00 0.11E-01 0.52E+00
> ERROR RMATX- 1
>
> the run is able to generate .smy, .smr,.ctl and MASM listing file but
> no table.
>
> Jing
>
>
>
> This e-mail and any files transmitted with it, are intended solely for
> the use of the individual or entity to whom they are addressed.?If you
> have received this e-mail in error, please reply to this message and
> let the sender know.
>
>
>
>
> ------------------------------------------------------------------------
Quoted reply history
> From: Matt.Fidler
> To: hollidayy
> Date: Wed, 20 Jan 2010 15:48:59 -0600
> Subject: RE: [NMusers] missing table file
>
> Jing,
>
> Please post all of your nonmem output.
>
> Matt.
>
> ------------------------------------------------------------------------
> *From:* owner-nmusers
> [mailto:owner-nmusers
> *Sent:* Wednesday, January 20, 2010 1:01 PM
> *To:* nmusers
> *Subject:* [NMusers] missing table file
>
> Dear NMusers,
>
> I'm trying to run a control stream using NONMEM6. Minimization was
> successful but there is one error message RMATX -1. I get the output
> file with obj values and other estimates but I don't have the table
> file. My table record is posted below:
>
> $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
>
> I searched the archive and add the carriage return to the $table
> record and still got no tables.
> Is it has something to do with this error message? Any suggestion is
> appreciated.
>
>
> Jing
>
>
>
>
>
>
>
>
> This e-mail and any files transmitted with it, are intended solely for
> the use of the individual or entity to whom they are addressed.?If you
> have received this e-mail in error, please reply to this message and
> let the sender know.
>
>
>
> ------------------------------------------------------------------------
> Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up
> now. http://clk.atdmt.com/GBL/go/196390709/direct/01/
> This e-mail (including any attachments) is confidential and may be
> legally privileged. If you are not an intended recipient or an
> authorized representative of an intended recipient, you are prohibited
> from using, copying or distributing the information in this e-mail or
> its attachments. If you have received this e-mail in error, please
> notify the sender immediately by return e-mail and delete all copies
> of this message and any attachments.
> Thank you.
>
> ------------------------------------------------------------------------
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>
> This e-mail (including any attachments) is confidential and may be
> legally privileged. If you are not an intended recipient or an
> authorized representative of an intended recipient, you are prohibited
> from using, copying or distributing the information in this e-mail or
> its attachments. If you have received this e-mail in error, please
> notify the sender immediately by return e-mail and delete all copies
> of this message and any attachments.
>
> Thank you.
--
Nick Holford, Professor Clinical Pharmacology
Dept Pharmacology & Clinical Pharmacology
University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
email: n.holford
http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
Jing,
It appears that you ran this using Wings for NONMEM. Have you tried running
using nmfe6 or nmfe7?
Matt.
Quoted reply history
________________________________
From: Jing Nie [mailto:[email protected]]
Sent: Wednesday, January 20, 2010 4:00 PM
To: Fidler,Matt,FORT WORTH,R&D
Subject: RE: [NMusers] missing table file
Matt,
The NONMEM output I got as following:
THETA: KOUT SMAX SC50
ETA: BSVKOUT BSV_SMAX BSV_SC50
ERR:
1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN NVI1.2 PV1.0
THETA = 0.0538 0.337 346
ETASD = 0 1.01489 22.2711
ERRSD = 5.46809
MINIMIZATION SUCCESSFUL
P VAL.: 0.68E+00 0.11E-01 0.52E+00
ERROR RMATX- 1
the run is able to generate .smy, .smr,.ctl and MASM listing file but no table.
Jing
This e-mail and any files transmitted with it, are intended solely for the use
of the individual or entity to whom they are addressed.?If you have received
this e-mail in error, please reply to this message and let the sender know.
________________________________
From: [email protected]
To: [email protected]
Date: Wed, 20 Jan 2010 15:48:59 -0600
Subject: RE: [NMusers] missing table file
Jing,
Please post all of your nonmem output.
Matt.
________________________________
From: [email protected] [mailto:[email protected]] On
Behalf Of Jing Nie
Sent: Wednesday, January 20, 2010 1:01 PM
To: [email protected]
Subject: [NMusers] missing table file
Dear NMusers,
I'm trying to run a control stream using NONMEM6. Minimization was successful
but there is one error message RMATX -1. I get the output file with obj values
and other estimates but I don't have the table file. My table record is posted
below:
$TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
I searched the archive and add the carriage return to the $table record and
still got no tables.
Is it has something to do with this error message? Any suggestion is
appreciated.
Jing
This e-mail and any files transmitted with it, are intended solely for the use
of the individual or entity to whom they are addressed.?If you have received
this e-mail in error, please reply to this message and let the sender know.
________________________________
Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up
http://clk.atdmt.com/GBL/go/196390709/direct/01/
This e-mail (including any attachments) is confidential and may be legally
privileged. If you are not an intended recipient or an authorized
representative of an intended recipient, you are prohibited from using, copying
or distributing the information in this e-mail or its attachments. If you have
received this e-mail in error, please notify the sender immediately by return
e-mail and delete all copies of this message and any attachments.
Thank you.
________________________________
Hotmail: Powerful Free email with security by Microsoft. Get it
http://clk.atdmt.com/GBL/go/196390710/direct/01/
This e-mail (including any attachments) is confidential and may be legally
privileged. If you are not an intended recipient or an authorized
representative of an intended recipient, you are prohibited from using, copying
or distributing the information in this e-mail or its attachments. If you have
received this e-mail in error, please notify the sender immediately by return
e-mail and delete all copies of this message and any attachments.
Thank you.
Matt,
WFN would not affect whether NONMEM decides to output a table file.
I have never seen the error message RMATX- 1. Some errors will stop NONMEM from producing a table file.
Jing,
There is no such thing as a MASM listing file. I suspect you are talking about the raw NONMEM output file with the extension .lst.
Please look at the .lst file in the run folder. You should find more information there about the error and perhaps some indication of why it happened.
Nick
Fidler,Matt,FORT WORTH,R&D wrote:
> Jing,
>
> It appears that you ran this using Wings for NONMEM. Have you tried running using nmfe6 or nmfe7? Matt.
>
> ------------------------------------------------------------------------
> *From:* Jing Nie [mailto:[email protected]]
> *Sent:* Wednesday, January 20, 2010 4:00 PM
> *To:* Fidler,Matt,FORT WORTH,R&D
> *Subject:* RE: [NMusers] missing table file
>
> Matt,
>
> The NONMEM output I got as following:
>
> THETA: KOUT SMAX SC50 ETA: BSVKOUT BSV_SMAX BSV_SC50 ERR: 1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN NVI1.2 PV1.0
>
> THETA = 0.0538 0.337 346
> ETASD = 0 1.01489 22.2711
> ERRSD = 5.46809
>
> MINIMIZATION SUCCESSFUL
>
> P VAL.: 0.68E+00 0.11E-01 0.52E+00
> ERROR RMATX- 1
>
> the run is able to generate .smy, .smr,.ctl and MASM listing file but no table.
>
> Jing
>
> This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know.
>
> ------------------------------------------------------------------------
Quoted reply history
> From: [email protected]
> To: [email protected]
> Date: Wed, 20 Jan 2010 15:48:59 -0600
> Subject: RE: [NMusers] missing table file
>
> Jing,
>
> Please post all of your nonmem output. Matt.
>
> ------------------------------------------------------------------------
>
> *From:* [email protected] [ mailto: [email protected] ] *On Behalf Of *Jing Nie
>
> *Sent:* Wednesday, January 20, 2010 1:01 PM
> *To:* [email protected]
> *Subject:* [NMusers] missing table file
>
> Dear NMusers,
>
> I'm trying to run a control stream using NONMEM6. Minimization was successful but there is one error message RMATX -1. I get the output file with obj values and other estimates but I don't have the table file. My table record is posted below:
>
> $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
>
> I searched the archive and add the carriage return to the $table record and still got no tables. Is it has something to do with this error message? Any suggestion is appreciated.
>
> Jing
>
> This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know.
>
> ------------------------------------------------------------------------
>
> Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up now. < http://clk.atdmt.com/GBL/go/196390709/direct/01/ > This e-mail (including any attachments) is confidential and may be legally privileged. If you are not an intended recipient or an authorized representative of an intended recipient, you are prohibited from using, copying or distributing the information in this e-mail or its attachments. If you have received this e-mail in error, please notify the sender immediately by return e-mail and delete all copies of this message and any attachments.
>
> Thank you.
>
> ------------------------------------------------------------------------
>
> Hotmail: Powerful Free email with security by Microsoft. Get it now. < http://clk.atdmt.com/GBL/go/196390710/direct/01/ >
>
> This e-mail (including any attachments) is confidential and may be legally privileged. If you are not an intended recipient or an authorized representative of an intended recipient, you are prohibited from using, copying or distributing the information in this e-mail or its attachments. If you have received this e-mail in error, please notify the sender immediately by return e-mail and delete all copies of this message and any attachments.
>
> Thank you.
--
Nick Holford, Professor Clinical Pharmacology
Dept Pharmacology & Clinical Pharmacology
University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
email: [email protected]
http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
Sometimes table file is not printed if/when covariance step fail. Try remove $COV statement; it could help to get $TABLE output. Also, sometimes FO method is completed successfully but POSTHOC fails; then table file is not produced either. But the error message seems to point to $COV step.
Thanks
Leonid
--------------------------------------
Leonid Gibiansky, Ph.D.
President, QuantPharm LLC
web: www.quantpharm.com
e-mail: LGibiansky at quantpharm.com
tel: (301) 767 5566
Nick Holford wrote:
> Matt,
>
> WFN would not affect whether NONMEM decides to output a table file.
>
> I have never seen the error message RMATX- 1. Some errors will stop NONMEM from producing a table file.
>
> Jing,
>
> There is no such thing as a MASM listing file. I suspect you are talking about the raw NONMEM output file with the extension .lst.
>
> Please look at the .lst file in the run folder. You should find more information there about the error and perhaps some indication of why it happened.
>
> Nick
>
> Fidler,Matt,FORT WORTH,R&D wrote:
>
> > Jing,
> >
> > It appears that you ran this using Wings for NONMEM. Have you tried running using nmfe6 or nmfe7? Matt.
> >
> > ------------------------------------------------------------------------
> > *From:* Jing Nie [mailto:[email protected]]
> > *Sent:* Wednesday, January 20, 2010 4:00 PM
> > *To:* Fidler,Matt,FORT WORTH,R&D
> > *Subject:* RE: [NMusers] missing table file
> >
> > Matt,
> >
> > The NONMEM output I got as following:
> >
> > THETA: KOUT SMAX SC50 ETA: BSVKOUT BSV_SMAX BSV_SC50 ERR: 1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN NVI1.2 PV1.0
> >
> > THETA = 0.0538 0.337 346
> > ETASD = 0 1.01489 22.2711
> > ERRSD = 5.46809
> >
> > MINIMIZATION SUCCESSFUL
> >
> > P VAL.: 0.68E+00 0.11E-01 0.52E+00
> > ERROR RMATX- 1
> >
> > the run is able to generate .smy, .smr,.ctl and MASM listing file but no table.
> >
> > Jing
> >
> > This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know.
> >
> > ------------------------------------------------------------------------
Quoted reply history
> > From: [email protected]
> > To: [email protected]
> > Date: Wed, 20 Jan 2010 15:48:59 -0600
> > Subject: RE: [NMusers] missing table file
> >
> > Jing,
> >
> > Please post all of your nonmem output. Matt.
> >
> > ------------------------------------------------------------------------
> >
> > *From:* [email protected] [ mailto: [email protected] ] *On Behalf Of *Jing Nie
> >
> > *Sent:* Wednesday, January 20, 2010 1:01 PM
> > *To:* [email protected]
> > *Subject:* [NMusers] missing table file
> >
> > Dear NMusers,
> >
> > I'm trying to run a control stream using NONMEM6. Minimization was successful but there is one error message RMATX -1. I get the output file with obj values and other estimates but I don't have the table file. My table record is posted below:
> >
> > $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
> >
> > I searched the archive and add the carriage return to the $table record and still got no tables. Is it has something to do with this error message? Any suggestion is appreciated.
> >
> > Jing
> >
> > This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know.
> >
> > ------------------------------------------------------------------------
> >
> > Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up now. < http://clk.atdmt.com/GBL/go/196390709/direct/01/ > This e-mail (including any attachments) is confidential and may be legally privileged. If you are not an intended recipient or an authorized representative of an intended recipient, you are prohibited from using, copying or distributing the information in this e-mail or its attachments. If you have received this e-mail in error, please notify the sender immediately by return e-mail and delete all copies of this message and any attachments.
> >
> > Thank you.
> >
> > ------------------------------------------------------------------------
> >
> > Hotmail: Powerful Free email with security by Microsoft. Get it now. < http://clk.atdmt.com/GBL/go/196390710/direct/01/ >
> >
> > This e-mail (including any attachments) is confidential and may be legally privileged. If you are not an intended recipient or an authorized representative of an intended recipient, you are prohibited from using, copying or distributing the information in this e-mail or its attachments. If you have received this e-mail in error, please notify the sender immediately by return e-mail and delete all copies of this message and any attachments.
> >
> > Thank you.
>
> --
> Nick Holford, Professor Clinical Pharmacology
> Dept Pharmacology & Clinical Pharmacology
> University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
> tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
> email: [email protected]
> http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
Dear All,
Thank you for all the inputs. I tried to change .fit to .tab, but no table file
still. After Switching from FOCI to FO method with POSTHOC, I get the table
output . Also, If I just remove the $cov step but keep using FOCI, the table
file is produced.
Jing
This e-mail and any files transmitted with it, are intended solely for the use
of the individual or entity to whom they are addressed.?If you have received
this e-mail in error, please reply to this message and let the sender know.
> Date: Thu, 21 Jan 2010 00:12:08 -0500
> From: [email protected]
> To: [email protected]
> CC: [email protected]; [email protected]; [email protected]
> Subject: Re: [NMusers] missing table file
>
> Sometimes table file is not printed if/when covariance step fail. Try
> remove $COV statement; it could help to get $TABLE output. Also,
> sometimes FO method is completed successfully but POSTHOC fails; then
> table file is not produced either. But the error message seems to point
> to $COV step.
> Thanks
> Leonid
>
> --------------------------------------
> Leonid Gibiansky, Ph.D.
> President, QuantPharm LLC
> web: www.quantpharm.com
> e-mail: LGibiansky at quantpharm.com
> tel: (301) 767 5566
>
>
>
>
> Nick Holford wrote:
> > Matt,
> >
> > WFN would not affect whether NONMEM decides to output a table file.
> >
> > I have never seen the error message RMATX- 1. Some errors will stop
> > NONMEM from producing a table file.
> >
> > Jing,
> >
> > There is no such thing as a MASM listing file. I suspect you are talking
> > about the raw NONMEM output file with the extension .lst.
> >
> > Please look at the .lst file in the run folder. You should find more
> > information there about the error and perhaps some indication of why it
> > happened.
> >
> > Nick
> >
> > Fidler,Matt,FORT WORTH,R&D wrote:
> >> Jing,
> >>
> >> It appears that you ran this using Wings for NONMEM. Have you tried
> >> running using nmfe6 or nmfe7?
> >>
> >> Matt.
> >>
> >> ------------------------------------------------------------------------
> >> *From:* Jing Nie [mailto:[email protected]]
> >> *Sent:* Wednesday, January 20, 2010 4:00 PM
> >> *To:* Fidler,Matt,FORT WORTH,R&D
> >> *Subject:* RE: [NMusers] missing table file
> >>
> >> Matt,
> >>
> >> The NONMEM output I got as following:
> >>
> >> THETA: KOUT SMAX SC50
> >> ETA: BSVKOUT BSV_SMAX BSV_SC50
> >> ERR:
> >>
> >> 1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN
> >> NVI1.2 PV1.0
> >> THETA = 0.0538 0.337 346
> >> ETASD = 0 1.01489 22.2711
> >> ERRSD = 5.46809
> >>
> >> MINIMIZATION SUCCESSFUL
> >>
> >> P VAL.: 0.68E+00 0.11E-01 0.52E+00
> >> ERROR RMATX- 1
> >>
> >> the run is able to generate .smy, .smr,.ctl and MASM listing file but
> >> no table.
> >>
> >> Jing
> >>
> >>
> >>
> >> This e-mail and any files transmitted with it, are intended solely for
> >> the use of the individual or entity to whom they are addressed.?If you
> >> have received this e-mail in error, please reply to this message and
> >> let the sender know.
> >>
> >>
> >>
> >>
> >> ------------------------------------------------------------------------
Quoted reply history
> >> From: [email protected]
> >> To: [email protected]
> >> Date: Wed, 20 Jan 2010 15:48:59 -0600
> >> Subject: RE: [NMusers] missing table file
> >>
> >> Jing,
> >>
> >> Please post all of your nonmem output.
> >>
> >> Matt.
> >>
> >> ------------------------------------------------------------------------
> >> *From:* [email protected]
> >> [mailto:[email protected]] *On Behalf Of *Jing Nie
> >> *Sent:* Wednesday, January 20, 2010 1:01 PM
> >> *To:* [email protected]
> >> *Subject:* [NMusers] missing table file
> >>
> >> Dear NMusers,
> >>
> >> I'm trying to run a control stream using NONMEM6. Minimization was
> >> successful but there is one error message RMATX -1. I get the output
> >> file with obj values and other estimates but I don't have the table
> >> file. My table record is posted below:
> >>
> >> $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
> >>
> >> I searched the archive and add the carriage return to the $table
> >> record and still got no tables.
> >> Is it has something to do with this error message? Any suggestion is
> >> appreciated.
> >>
> >>
> >> Jing
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> This e-mail and any files transmitted with it, are intended solely for
> >> the use of the individual or entity to whom they are addressed.?If you
> >> have received this e-mail in error, please reply to this message and
> >> let the sender know.
> >>
> >>
> >>
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> > --
> > Nick Holford, Professor Clinical Pharmacology
> > Dept Pharmacology & Clinical Pharmacology
> > University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
> > tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
> > email: [email protected]
> > http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
> >
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