Re: missing table file
Sometimes table file is not printed if/when covariance step fail. Try remove $COV statement; it could help to get $TABLE output. Also, sometimes FO method is completed successfully but POSTHOC fails; then table file is not produced either. But the error message seems to point to $COV step.
Thanks
Leonid
--------------------------------------
Leonid Gibiansky, Ph.D.
President, QuantPharm LLC
web: www.quantpharm.com
e-mail: LGibiansky at quantpharm.com
tel: (301) 767 5566
Nick Holford wrote:
> Matt,
>
> WFN would not affect whether NONMEM decides to output a table file.
>
> I have never seen the error message RMATX- 1. Some errors will stop NONMEM from producing a table file.
>
> Jing,
>
> There is no such thing as a MASM listing file. I suspect you are talking about the raw NONMEM output file with the extension .lst.
>
> Please look at the .lst file in the run folder. You should find more information there about the error and perhaps some indication of why it happened.
>
> Nick
>
> Fidler,Matt,FORT WORTH,R&D wrote:
>
> > Jing,
> >
> > It appears that you ran this using Wings for NONMEM. Have you tried running using nmfe6 or nmfe7? Matt.
> >
> > ------------------------------------------------------------------------
> > *From:* Jing Nie [mailto:[email protected]]
> > *Sent:* Wednesday, January 20, 2010 4:00 PM
> > *To:* Fidler,Matt,FORT WORTH,R&D
> > *Subject:* RE: [NMusers] missing table file
> >
> > Matt,
> >
> > The NONMEM output I got as following:
> >
> > THETA: KOUT SMAX SC50 ETA: BSVKOUT BSV_SMAX BSV_SC50 ERR: 1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN NVI1.2 PV1.0
> >
> > THETA = 0.0538 0.337 346
> > ETASD = 0 1.01489 22.2711
> > ERRSD = 5.46809
> >
> > MINIMIZATION SUCCESSFUL
> >
> > P VAL.: 0.68E+00 0.11E-01 0.52E+00
> > ERROR RMATX- 1
> >
> > the run is able to generate .smy, .smr,.ctl and MASM listing file but no table.
> >
> > Jing
> >
> > This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know.
> >
> > ------------------------------------------------------------------------
Quoted reply history
> > From: [email protected]
> > To: [email protected]
> > Date: Wed, 20 Jan 2010 15:48:59 -0600
> > Subject: RE: [NMusers] missing table file
> >
> > Jing,
> >
> > Please post all of your nonmem output. Matt.
> >
> > ------------------------------------------------------------------------
> >
> > *From:* [email protected] [ mailto: [email protected] ] *On Behalf Of *Jing Nie
> >
> > *Sent:* Wednesday, January 20, 2010 1:01 PM
> > *To:* [email protected]
> > *Subject:* [NMusers] missing table file
> >
> > Dear NMusers,
> >
> > I'm trying to run a control stream using NONMEM6. Minimization was successful but there is one error message RMATX -1. I get the output file with obj values and other estimates but I don't have the table file. My table record is posted below:
> >
> > $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit
> >
> > I searched the archive and add the carriage return to the $table record and still got no tables. Is it has something to do with this error message? Any suggestion is appreciated.
> >
> > Jing
> >
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> >
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> --
> Nick Holford, Professor Clinical Pharmacology
> Dept Pharmacology & Clinical Pharmacology
> University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
> tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
> email: [email protected]
> http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford