RE: missing table file

From: Jing Nie Date: January 21, 2010 technical Source: mail-archive.com
Dear All, Thank you for all the inputs. I tried to change .fit to .tab, but no table file still. After Switching from FOCI to FO method with POSTHOC, I get the table output . Also, If I just remove the $cov step but keep using FOCI, the table file is produced. Jing This e-mail and any files transmitted with it, are intended solely for the use of the individual or entity to whom they are addressed.?If you have received this e-mail in error, please reply to this message and let the sender know. > Date: Thu, 21 Jan 2010 00:12:08 -0500 > From: [email protected] > To: [email protected] > CC: [email protected]; [email protected]; [email protected] > Subject: Re: [NMusers] missing table file > > Sometimes table file is not printed if/when covariance step fail. Try > remove $COV statement; it could help to get $TABLE output. Also, > sometimes FO method is completed successfully but POSTHOC fails; then > table file is not produced either. But the error message seems to point > to $COV step. > Thanks > Leonid > > -------------------------------------- > Leonid Gibiansky, Ph.D. > President, QuantPharm LLC > web: www.quantpharm.com > e-mail: LGibiansky at quantpharm.com > tel: (301) 767 5566 > > > > > Nick Holford wrote: > > Matt, > > > > WFN would not affect whether NONMEM decides to output a table file. > > > > I have never seen the error message RMATX- 1. Some errors will stop > > NONMEM from producing a table file. > > > > Jing, > > > > There is no such thing as a MASM listing file. I suspect you are talking > > about the raw NONMEM output file with the extension .lst. > > > > Please look at the .lst file in the run folder. You should find more > > information there about the error and perhaps some indication of why it > > happened. > > > > Nick > > > > Fidler,Matt,FORT WORTH,R&D wrote: > >> Jing, > >> > >> It appears that you ran this using Wings for NONMEM. Have you tried > >> running using nmfe6 or nmfe7? > >> > >> Matt. > >> > >> ------------------------------------------------------------------------ > >> *From:* Jing Nie [mailto:[email protected]] > >> *Sent:* Wednesday, January 20, 2010 4:00 PM > >> *To:* Fidler,Matt,FORT WORTH,R&D > >> *Subject:* RE: [NMusers] missing table file > >> > >> Matt, > >> > >> The NONMEM output I got as following: > >> > >> THETA: KOUT SMAX SC50 > >> ETA: BSVKOUT BSV_SMAX BSV_SC50 > >> ERR: > >> > >> 1drA_amt.lst 257.613 eval=430 sig=3.3 sub=53 obs=53 CCIL=YNYN > >> NVI1.2 PV1.0 > >> THETA = 0.0538 0.337 346 > >> ETASD = 0 1.01489 22.2711 > >> ERRSD = 5.46809 > >> > >> MINIMIZATION SUCCESSFUL > >> > >> P VAL.: 0.68E+00 0.11E-01 0.52E+00 > >> ERROR RMATX- 1 > >> > >> the run is able to generate .smy, .smr,.ctl and MASM listing file but > >> no table. > >> > >> Jing > >> > >> > >> > >> This e-mail and any files transmitted with it, are intended solely for > >> the use of the individual or entity to whom they are addressed.?If you > >> have received this e-mail in error, please reply to this message and > >> let the sender know. > >> > >> > >> > >> > >> ------------------------------------------------------------------------
Quoted reply history
> >> From: [email protected] > >> To: [email protected] > >> Date: Wed, 20 Jan 2010 15:48:59 -0600 > >> Subject: RE: [NMusers] missing table file > >> > >> Jing, > >> > >> Please post all of your nonmem output. > >> > >> Matt. > >> > >> ------------------------------------------------------------------------ > >> *From:* [email protected] > >> [mailto:[email protected]] *On Behalf Of *Jing Nie > >> *Sent:* Wednesday, January 20, 2010 1:01 PM > >> *To:* [email protected] > >> *Subject:* [NMusers] missing table file > >> > >> Dear NMusers, > >> > >> I'm trying to run a control stream using NONMEM6. Minimization was > >> successful but there is one error message RMATX -1. I get the output > >> file with obj values and other estimates but I don't have the table > >> file. My table record is posted below: > >> > >> $TABLE ID TIME IPRE NOPRINT ONEHEADER FILE=1.fit > >> > >> I searched the archive and add the carriage return to the $table > >> record and still got no tables. > >> Is it has something to do with this error message? Any suggestion is > >> appreciated. > >> > >> > >> Jing > >> > >> > >> > >> > >> > >> > >> > >> > >> This e-mail and any files transmitted with it, are intended solely for > >> the use of the individual or entity to whom they are addressed.?If you > >> have received this e-mail in error, please reply to this message and > >> let the sender know. > >> > >> > >> > >> ------------------------------------------------------------------------ > >> Your E-mail and More On-the-Go. Get Windows Live Hotmail Free. Sign up > >> now. http://clk.atdmt.com/GBL/go/196390709/direct/01/ > >> This e-mail (including any attachments) is confidential and may be > >> legally privileged. If you are not an intended recipient or an > >> authorized representative of an intended recipient, you are prohibited > >> from using, copying or distributing the information in this e-mail or > >> its attachments. If you have received this e-mail in error, please > >> notify the sender immediately by return e-mail and delete all copies > >> of this message and any attachments. > >> Thank you. > >> > >> ------------------------------------------------------------------------ > >> Hotmail: Powerful Free email with security by Microsoft. Get it now. > >> http://clk.atdmt.com/GBL/go/196390710/direct/01/ > >> > >> This e-mail (including any attachments) is confidential and may be > >> legally privileged. If you are not an intended recipient or an > >> authorized representative of an intended recipient, you are prohibited > >> from using, copying or distributing the information in this e-mail or > >> its attachments. If you have received this e-mail in error, please > >> notify the sender immediately by return e-mail and delete all copies > >> of this message and any attachments. > >> > >> Thank you. > > > > -- > > Nick Holford, Professor Clinical Pharmacology > > Dept Pharmacology & Clinical Pharmacology > > University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand > > tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53 > > email: [email protected] > > http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford > > _________________________________________________________________ Hotmail: Powerful Free email with security by Microsoft. http://clk.atdmt.com/GBL/go/196390710/direct/01/
Jan 20, 2010 Jing Nie missing table file
Jan 20, 2010 Matt Fidler RE: missing table file
Jan 20, 2010 Nick Holford Re: missing table file
Jan 20, 2010 Matt Fidler RE: missing table file
Jan 21, 2010 Nick Holford Re: missing table file
Jan 21, 2010 Leonid Gibiansky Re: missing table file
Jan 21, 2010 Jing Nie RE: missing table file