ISAMPLE in SAEM algorithm with ETASAMPLES=1

3 messages 2 people Latest: Oct 08, 2020

ISAMPLE in SAEM algorithm with ETASAMPLES=1

From: Tingjie Guo Date: October 07, 2020 technical
Dear all, I'm using SAEM algorithm with option ETASAMPLES=1 ISAMPLE=10 EONLY=1 to draw random eta samples from individual posteriors, according to the NONMEM user guide. However, I realized that ISAMPLE can not be larger than 10 otherwise NONMEM will generate only two samples per individual as if ISAMPLE=2. I was wondering if there's way if I wish to have for instance 50 ISAMPLES? Additionally, in the example from the NONMEM user guide of using ETASAMPLES=1 EONLY=1, NBURN is set to 200. From my understanding, for such purpose, SAEM uses parameter estimates from previous $EST step and only draws random samples around them and there's no maximization step. I guess NBURN=1 would be sufficient? Any comment is appreciated! Warm regards, Tingjie Guo

RE: ISAMPLE in SAEM algorithm with ETASAMPLES=1

From: Robert Bauer Date: October 08, 2020 technical
Tingjie: The ETASAMPLES method is better developed in NONMEM 7.5.0, along with the description of it in nm750.pdf Maximal ISAMPLE can be increased with $SIZES ISAMPLEMAX=250 for example. Robert J. Bauer, Ph.D. Senior Director Pharmacometrics R&D ICON Early Phase 820 W. Diamond Avenue Suite 100 Gaithersburg, MD 20878 Office: (215) 616-6428 Mobile: (925) 286-0769 [email protected]<mailto:[email protected]> http://www.iconplc.com

Re: ISAMPLE in SAEM algorithm with ETASAMPLES=1

From: Tingjie Guo Date: October 08, 2020 technical
Dear Robert, Thanks! Do you also agree with NBURN=1? Warm regards, Tingjie
Quoted reply history
On Thu, Oct 8, 2020, at 06:33, Bauer, Robert wrote: > Tingjie: > The ETASAMPLES method is better developed in NONMEM 7.5.0, along with the > description of it in nm750.pdf > Maximal ISAMPLE can be increased with > > $SIZES ISAMPLEMAX=250 > > for example. > > Robert J. Bauer, Ph.D. > Senior Director > Pharmacometrics R&D > ICON Early Phase > 820 W. Diamond Avenue > Suite 100 > Gaithersburg, MD 20878 > Office: (215) 616-6428 > Mobile: (925) 286-0769 > [email protected] > www.iconplc.com > > > >