RE: $ABBR REPLACE Limitations?
This bug has been fixed since NONMEM 7.4
Bug #1, nm730_bug_list.pdf in https://nonmem.iconplc.com/nonmem730
Two variables with names longer than six characters, and identical in the first
six characters, defined in $PK, and used in $DES, will be seen as the same
variable. Use variable names that differ in the first six characters. This
occurs in NONMEM 7.1.0, 7.1.2, 7.2.0, and 7.3.0. A workaround is to move all
assignment statements for variables whose first 6 characters match to $DES.
Robert J. Bauer, Ph.D.
Senior Director
Pharmacometrics R&D
ICON Early Phase
820 W. Diamond Avenue
Suite 100
Gaithersburg, MD 20878
Office: (215) 616-6428
Mobile: (925) 286-0769
[email protected]<mailto:[email protected]>
http://www.iconplc.com/
Quoted reply history
From: [email protected] [mailto:[email protected]] On
Behalf Of Bill Denney
Sent: Tuesday, January 23, 2018 4:40 PM
To: Luann Phillips
Cc: nmusers
Subject: RE: [NMusers] $ABBR REPLACE Limitations?
Hi Luann,
I’m not having similar problems with other parameters with >6 characters. I
had a similar issue with ALAG1, so I think that there are limitations on what
types of variables you can remap. (Perhaps Allison or Bob could confirm?)
Thanks,
Bill
From: Luann Phillips
[mailto:[email protected]<mailto:[email protected]>]
Sent: Tuesday, January 23, 2018 3:51 PM
To: Bill Denney
<[email protected]<mailto:[email protected]>>
Cc: nmusers <[email protected]<mailto:[email protected]>>
Subject: Re: [NMusers] $ABBR REPLACE Limitations?
Bill,
I know at one time NM had a bug (haven't checked to see if it has been fixed)
that would cause variables with the first 6 characters the same to be
interpreted as the same variable even when later characters differed. I wonder
if this is a similar issue?
Have you tried a shorter variable name, such as FCD1GUT=F1?
Just a thought,
Luann
________________________________
From: "Bill Denney"
<[email protected]<mailto:[email protected]>>
To: "nmusers" <[email protected]<mailto:[email protected]>>
Sent: Tuesday, January 23, 2018 2:15:32 PM
Subject: [NMusers] $ABBR REPLACE Limitations?
Hi,
I’m working in NONMEM 7.4.1 with a model where I need to track 4 drugs
simultaneously. To increase the model quality, I’m making heavy use of $ABBR
REPLACE to keep track of THETA, ETA, and CMT numbers. I traced an issue with
my model where there was no gradient on a bioavailability term to the fact that
this substitution didn’t seem to be working:
$ABBR REPLACE FCMTD1GUT=F1
…
$PK
…
FCMTD1GUT = THETA(1)
FCMTD1GUT didn’t seem to be effectively replaced to F1, so the bioavailability
parameters had no effect. When I changed it to just directly name F1, it
worked as expected.
$PK
…
F1 = THETA(1)
It’s not obvious from the $ABBR REPLACE section of the manual that this is a
limitation of $ABBR REPLACE. Is this an issue or am I missing something?
Thanks,
Bill
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http://www.humanpredictions.com/ http://www.humanpredictions.com/William
S. Denney, PhD
Chief Scientist, Human Predictions LLC
+1-617-899-8123
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