Re: Re: MPI error when run directory is a Windows network drive

On 17/06/2011 9:17 a.m., [email protected] wrote: > It works for me! Thank you very much. > > Andreas. > Ferrer > Dr. Andreas Lindauer > Modeling & Simulation and in vivo ADME > Dept. of Pharmacokinetics and Metabolism > R&D Center. Ferrer Internacional S.A. > Juan de Sada 32, 08028 Barcelona > Tel +34 93 509 3265 > Fax +34 93 411 2764 > [email protected] > www.ferrergrupo.com > > Recicla ¿Necesita imprimir este mensaje? Protejamos el medio ambiente. Li cal imprimir aquest missatge? Protegim el medi ambient. Do you need to print this message? Let's protect the environment. > > Este mensaje, y en su caso, cualquier fichero anexo al mismo, puede contener información confidencial, siendo para uso exclusivo del destinatario, quedando prohibida su divulgación, copia o distribución a terceros sin la autorización expresa del remitente. Si Vd. ha recibido este mensaje erróneamente, se ruega lo notifique al remitente y proceda a su borrado. Gracias por su colaboración. > > This message and its annexed files may contain confidential information which is exclusively for the use of the addressee. It is strictly forbidden to distribute copies to third parties without the explicit permission of the sender. If you receive this message by mistake, please notify it to the sender and make sure to delete it. Thank you for your kind cooperation. > > *"Bauer, Robert" <[email protected]>* > Enviado por: [email protected] > > 16/06/2011 19:52 > > Para > <[email protected]>, "nmusers" <[email protected]> > cc > > Asunto > > RE: [NMusers] Re: MPI error when run directory is a Windows network drive > > Nick and Andreas: > > I managed to get MPI work when running from a windows network drive by placing -mapall on every command line to mpiexec. For example, > > 1:mpiexec -mapall -wdir "%cd%" -hosts 1 localhost 1 nonmem.exe %* > > 2-[nodes]:-mapall -wdir "%cd%\worker{#-1}" -hosts 1 localhost 1 nonmem.exe > > Robert J. Bauer, Ph.D. > > Vice President, Pharmacometrics > > ICON Development Solutions > > Tel: (215) 616-6428 > > Mob: (925) 286-0769 > > Email: [email protected] > > Web: _www.icondevsolutions.com_ <outbind://242/www.icondevsolutions.com> > > ------------------------------------------------------------------------ > > *From:* [email protected] [ mailto: [email protected] ] *On Behalf Of * [email protected] * > > Sent:* Thursday, June 16, 2011 8:27 AM* > To:* nmusers* > > Subject:* Re: [NMusers] Re: MPI error when run directory is a Windows network drive > > Nick, > > I am having exactly the same problem that you describe. Have you already found a solution? > > Regards, Andreas. > Ferrer > Dr. Andreas Lindauer > Modeling & Simulation and in vivo ADME > Dept. of Pharmacokinetics and Metabolism > R&D Center. Ferrer Internacional S.A. > Juan de Sada 32, 08028 Barcelona > Tel +34 93 509 3265 > Fax +34 93 411 2764 > [email protected] > www.ferrergrupo.com > > Recicla ¿Necesita imprimir este mensaje? Protejamos el medio ambiente. Li cal imprimir aquest missatge? Protegim el medi ambient. Do you need to print this message? Let's protect the environment. > > Este mensaje, y en su caso, cualquier fichero anexo al mismo, puede contener información confidencial, siendo para uso exclusivo del destinatario, quedando prohibida su divulgación, copia o distribución a terceros sin la autorización expresa del remitente. Si Vd. ha recibido este mensaje erróneamente, se ruega lo notifique al remitente y proceda a su borrado. Gracias por su colaboración. > > This message and its annexed files may contain confidential information which is exclusively for the use of the addressee. It is strictly forbidden to distribute copies to third parties without the explicit permission of the sender. If you receive this message by mistake, please notify it to the sender and make sure to delete it. Thank you for your kind cooperation. > > *Nick Holford <[email protected]>* > Enviado por: [email protected] > > 02/06/2011 17:39 > > Para > nmusers <[email protected]> > cc > > Asunto > [NMusers] Re: MPI error when run directory is a Windows network drive > > [This the fourth time I have sent this email but it I don't see it > appearing on nmusers. Sorry if this is the third time for you. Would > someone please contact me if they see this?] > > On 2/06/2011 5:03 a.m., Nick Holford wrote: > > > > Hi, > > > > I can use nmfe72 to perform an MPI run when executed from the host > > local C: drive but when I use exactly the same files (control stream > > file, data file, parafile) copied to a network drive I get an error > > about the parafile being missing. > > > > I'm using NM7.2.0 on WinSrvEnt2003. I get the same error with Intel > > 11.1 or gfortran compiled versions. Hard coding the run directory in > > the parafile instead of using %cd% has the same error. > > nmfe72 without a parafile option works OK with the network drive run > > directory. > > > > Has anyone else had success in getting mpi to execute with a Windows > > network drive as the run directory? > > > > nmfe72 theopd.ctl theopd.lst "-parafile=mpi2.pnm" > > [...] > > > > USING PARALLEL PROFILE mpi2.pnm > > > > MPI TRANSFER TYPE SELECTED > > > > Starting MPI version of nonmem execution ... > > > > PARAFILE NOT FOUND: mpi2.pnm > > > > > > ============= mpi2.pnm ======================== > > $DEFAULTS > > [nodes]=2 > > $GENERAL > > NODES=[nodes] PARSE_TYPE=2 PARSE_NUM=200 TIMEOUTI=600 TIMEOUT=1000 > > PARAPRINT=0 TRANSFER_TYPE=1 > > $COMMANDS > > 1:mpiexec -wdir "%cd%" -hosts 1 localhost 1 <<nmexec>> %* > > 2-[nodes]:-wdir "%cd%\worker{#-1}" -hosts 1 localhost 1 <<nmexec>> > > $DIRECTORIES > > 1:NONE ; FIRST DIRECTORY IS THE COMMON DIRECTORY > > 2-[nodes]:worker{#-1} ; NEXT SET ARE THE WORKER directories > > > > ============= nmmpi.bat created by nmfe72 ======================== > > mpiexec -wdir "%cd%" -hosts 1 localhost 1 nonmem.exe %* : ^ > > -wdir "%cd%\worker1" -hosts 1 localhost 1 nonmem.exe > > > > > > > > > > > > > > -- > > Nick Holford, Professor Clinical Pharmacology > > Dept Pharmacology& Clinical Pharmacology > > University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand > > tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53 > > email:[email protected] > > _ http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford > > -- > Nick Holford, Professor Clinical Pharmacology > Dept Pharmacology& Clinical Pharmacology > University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand > tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53 > email:[email protected]__ > __ http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford > _ > >