Re: Re: MPI error when run directory is a Windows network drive
Nick,
I am having exactly the same problem that you describe. Have you already
found a solution?
Regards, Andreas.
Dr. Andreas Lindauer
Modeling & Simulation and in vivo ADME
Dept. of Pharmacokinetics and Metabolism
R&D Center. Ferrer Internacional S.A.
Juan de Sada 32, 08028 Barcelona
Tel +34 93 509 3265
Fax +34 93 411 2764
[email protected]
www.ferrergrupo.com
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Nick Holford <[email protected]>
Enviado por: [email protected]
02/06/2011 17:39
Para
nmusers <[email protected]>
cc
Asunto
[NMusers] Re: MPI error when run directory is a Windows network drive
[This the fourth time I have sent this email but it I don't see it
appearing on nmusers. Sorry if this is the third time for you. Would
someone please contact me if they see this?]
Quoted reply history
On 2/06/2011 5:03 a.m., Nick Holford wrote:
>
> Hi,
>
> I can use nmfe72 to perform an MPI run when executed from the host
> local C: drive but when I use exactly the same files (control stream
> file, data file, parafile) copied to a network drive I get an error
> about the parafile being missing.
>
> I'm using NM7.2.0 on WinSrvEnt2003. I get the same error with Intel
> 11.1 or gfortran compiled versions. Hard coding the run directory in
> the parafile instead of using %cd% has the same error.
> nmfe72 without a parafile option works OK with the network drive run
> directory.
>
> Has anyone else had success in getting mpi to execute with a Windows
> network drive as the run directory?
>
> nmfe72 theopd.ctl theopd.lst "-parafile=mpi2.pnm"
> [...]
>
> USING PARALLEL PROFILE mpi2.pnm
>
> MPI TRANSFER TYPE SELECTED
>
> Starting MPI version of nonmem execution ...
>
> PARAFILE NOT FOUND: mpi2.pnm
>
>
> ============= mpi2.pnm ========================
> $DEFAULTS
> [nodes]=2
> $GENERAL
> NODES=[nodes] PARSE_TYPE=2 PARSE_NUM=200 TIMEOUTI=600 TIMEOUT=1000
> PARAPRINT=0 TRANSFER_TYPE=1
> $COMMANDS
> 1:mpiexec -wdir "%cd%" -hosts 1 localhost 1 <<nmexec>> %*
> 2-[nodes]:-wdir "%cd%\worker{#-1}" -hosts 1 localhost 1 <<nmexec>>
> $DIRECTORIES
> 1:NONE ; FIRST DIRECTORY IS THE COMMON DIRECTORY
> 2-[nodes]:worker{#-1} ; NEXT SET ARE THE WORKER directories
>
> ============= nmmpi.bat created by nmfe72 ========================
> mpiexec -wdir "%cd%" -hosts 1 localhost 1 nonmem.exe %* : ^
> -wdir "%cd%\worker1" -hosts 1 localhost 1 nonmem.exe
>
>
>
>
>
>
> --
> Nick Holford, Professor Clinical Pharmacology
> Dept Pharmacology& Clinical Pharmacology
> University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
> tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
> email:[email protected]
> http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
--
Nick Holford, Professor Clinical Pharmacology
Dept Pharmacology& Clinical Pharmacology
University of Auckland,85 Park Rd,Private Bag 92019,Auckland,New Zealand
tel:+64(9)923-6730 fax:+64(9)373-7090 mobile:+64(21)46 23 53
email:[email protected]
http://www.fmhs.auckland.ac.nz/sms/pharmacology/holford
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