Dear all,
We have performed a VPC using PsN and the results were plotted using Xpose
4. An interesting feature of the graph is that the outer limits of the
interval do not follow the typical curve smoothly but change with the
observed data. As an example, toward the end of the time interval, where we
have a larger variability in the observations, the lines widen and capture
most of the data. I have difficulties understanding why the prediction lines
behave this way. Any comments?
Toufigh
VPC results using PsN and Xpose
5 messages
5 people
Latest: May 11, 2012
Toufigh
It would help to see the plot. One possibility is that the plot is in the log scale, and you have additive error component that plays larger role at low concentrations.
Leonid
--------------------------------------
Leonid Gibiansky, Ph.D.
President, QuantPharm LLC
web: www.quantpharm.com
e-mail: LGibiansky at quantpharm.com
tel: (301) 767 5566
Quoted reply history
On 5/10/2012 12:49 PM, Toufigh Gordi wrote:
> Dear all,
>
> We have performed a VPC using PsN and the results were plotted using
> Xpose 4. An interesting feature of the graph is that the outer limits of
> the interval do not follow the typical curve smoothly but change with
> the observed data. As an example, toward the end of the time interval,
> where we have a larger variability in the observations, the lines widen
> and capture most of the data. I have difficulties understanding why the
> prediction lines behave this way. Any comments?
>
> Toufigh
Or, maybe it's bin problem.
Kun Wang
'[email protected]'<[email protected]>;
-----Original Message----- From: Leonid Gibiansky Sent: Thursday, May 10, 2012 10:58 AM To: Toufigh Gordi Cc: ' [email protected] ' Subject: Re: [NMusers] VPC results using PsN and Xpose
Toufigh
It would help to see the plot. One possibility is that the plot is in the log scale, and you have additive error component that plays larger role at low concentrations.
Leonid
--------------------------------------
Leonid Gibiansky, Ph.D.
President, QuantPharm LLC
web: www.quantpharm.com
e-mail: LGibiansky at quantpharm.com
tel: (301) 767 5566
Quoted reply history
On 5/10/2012 12:49 PM, Toufigh Gordi wrote:
> Dear all,
>
> We have performed a VPC using PsN and the results were plotted using
> Xpose 4. An interesting feature of the graph is that the outer limits of
> the interval do not follow the typical curve smoothly but change with
> the observed data. As an example, toward the end of the time interval,
> where we have a larger variability in the observations, the lines widen
> and capture most of the data. I have difficulties understanding why the
> prediction lines behave this way. Any comments?
>
> Toufigh
Hi Toufigh, I saw exactly the same scenario when using the proportional +
additive model in the log domain. It probably has to do with the residual
error as Leonid suggested. Converting the residual model to just additive
and estimating the error as a THETA (by fixing SIGMA =1, W=THETA) removed
the widening in the terminal part of the VPCs.
Neil
Quoted reply history
On Thu, May 10, 2012 at 12:49 PM, Toufigh Gordi <[email protected]>wrote:
> Dear all,
>
> We have performed a VPC using PsN and the results were plotted using Xpose
> 4. An interesting feature of the graph is that the outer limits of the
> interval do not follow the typical curve smoothly but change with the
> observed data. As an example, toward the end of the time interval, where we
> have a larger variability in the observations, the lines widen and capture
> most of the data. I have difficulties understanding why the prediction
> lines behave this way. Any comments?
>
> Toufigh
>
--
Indranil Bhattacharya
All,
I think Leonid and Neil have pointed out two plausible explanations, I just
wanted to highlight that these are two separate issues:
* If you have an additive component in your error model a graph on log
scale would appear to widen at the end. This is fine. In this particular case
since observations also widen at the end this may be a likely explanation, with
the limited information nmusers have
* If you have implemented a translation of proportional + additive on
the log scale; this is only an approximation and in particular for simulations
it may fall over. This occurs when IPRED is VERY close to zero. Typically this
occurs around the time when drug is first absorbed (e.g. towards the end of lag
time), but if you have rapid elimination I guess it can happen at the end of
the time interval. This error model is not suitable when IPRED is very small,
and then issue only appears during simulation. As a result, one may simulate
odd observations with concentrations towards the infinite at the time of lag.
If this is affecting you VPC you certainly need to deal with it and one
solution would be to change your error model, as Neil suggests. As an
alternative, putting a very low cutoff to the IPRED used in weighting the error
would help. Since the cutoff is very low it will not affect estimation, but
will remove unreasonable values during simulation.
Best regards
Jakob
Quoted reply history
From: [email protected] [mailto:[email protected]] On
Behalf Of Indranil Bhattacharya
Sent: 10 May 2012 19:39
To: Toufigh Gordi
Cc: [email protected]
Subject: Re: [NMusers] VPC results using PsN and Xpose
Hi Toufigh, I saw exactly the same scenario when using the proportional +
additive model in the log domain. It probably has to do with the residual error
as Leonid suggested. Converting the residual model to just additive and
estimating the error as a THETA (by fixing SIGMA =1, W=THETA) removed the
widening in the terminal part of the VPCs.
Neil
On Thu, May 10, 2012 at 12:49 PM, Toufigh Gordi
<[email protected]<mailto:[email protected]>> wrote:
Dear all,
We have performed a VPC using PsN and the results were plotted using Xpose 4.
An interesting feature of the graph is that the outer limits of the interval do
not follow the typical curve smoothly but change with the observed data. As an
example, toward the end of the time interval, where we have a larger
variability in the observations, the lines widen and capture most of the data.
I have difficulties understanding why the prediction lines behave this way. Any
comments?
Toufigh
--
Indranil Bhattacharya