Dear NMusers (and Bob).
I'm getting an error running parallel NONMEM, with MPI. It seems that perhaps the file size is limited to ~10,000 lines, the error I'm getting is:
forrtl: severe (24): end-of-file during read, unit 10, file c:\xxxxxxx\WK1_FILE10.
Setting NREC = 10001 works, setting NREC = 10002 gives the above error. Doesn't seem related to the size of the file, just the number of records.? Perhaps this is related to the 4 digits assigned for the length of the data file in FCON (but then why 10001, not 10000)? Anyone know of a work-around?
thanks
Mark
Mark Sale M.D.
Vice President, Modeling and Simulation
Nuventra, Inc. (tm)
2525 Meridian Parkway, Suite 280
Research Triangle Park, NC 27713
Office (919)-973-0383
msale_at_nuventra.com<msale_at_kinetigen.com>
http://www.nuventra.com
?
Error in parallel nonmem - related to file size?
Dear NMusers (and Bob).
I'm getting an error running parallel NONMEM, with MPI. It seems that
perhaps the file size is limited to ~10,000 lines, the error I'm getting is:
forrtl: severe (24): end-of-file during read, unit 10, file
c:\xxxxxxx\WK1_FILE10.
Setting NREC = 10001 works, setting NREC = 10002 gives the above error.
Doesn't seem related to the size of the file, just the number of records.?
Perhaps this is related to the 4 digits assigned for the length of the data
file in FCON (but then why 10001, not 10000)? Anyone know of a work-around?
thanks
Mark
Mark Sale M.D.
Vice President, Modeling and Simulation
Nuventra, Inc. (tm)
2525 Meridian Parkway, Suite 280
Research Triangle Park, NC 27713
Office (919)-973-0383
[email protected]<[email protected]>
http://www.nuventra.com
?
Mark:
You may want to try adding the following
COMPUTERS=2
In the $GENERAL section of your pnm file (even if you are only using one
computer, it won’t hurt).
Alternatively, you may try using the –maxlim=3 option on the nmfe73 command
line, to have all buffer/file activity placed in memory.
Robert J. Bauer, Ph.D.
Vice President, Pharmacometrics, R&D
ICON Development Solutions
7740 Milestone Parkway
Suite 150
Hanover, MD 21076
Tel: (215) 616-6428
Mob: (925) 286-0769
Email: [email protected]<mailto:[email protected]>
Web: http://www.iconplc.com/
Quoted reply history
From: Mark Sale [mailto:[email protected]]
Sent: Tuesday, February 24, 2015 6:26 PM
To: [email protected]; Bauer, Robert
Subject: Error in parallel nonmem - related to file size?
Dear NMusers (and Bob).
I'm getting an error running parallel NONMEM, with MPI. It seems that
perhaps the file size is limited to ~10,000 lines, the error I'm getting is:
forrtl: severe (24): end-of-file during read, unit 10, file
c:\xxxxxxx\WK1_FILE10.
Setting NREC = 10001 works, setting NREC = 10002 gives the above error.
Doesn't seem related to the size of the file, just the number of records.
Perhaps this is related to the 4 digits assigned for the length of the data
file in FCON (but then why 10001, not 10000)? Anyone know of a work-around?
thanks
Mark
Mark Sale M.D.
Vice President, Modeling and Simulation
Nuventra, Inc. ™
2525 Meridian Parkway, Suite 280
Research Triangle Park, NC 27713
Office (919)-973-0383
[email protected]<[email protected]>
http://www.nuventra.com