RE: Cleaning Up After NONMEM

From: Robert Bauer Date: June 08, 2018 technical Source: mail-archive.com
Mark: You can create a batch file, such as nmfe74_cleanup.bat (or whatever name you wish), with contents such as call nmfe74.bat %* del *.set which will run the original nonmem script (and all arguments are passed with %*), and when done, go on to delete whichever files you wish. Robert J. Bauer, Ph.D. Senior Director Pharmacometrics R&D ICON Early Phase 820 W. Diamond Avenue Suite 100 Gaithersburg, MD 20878 Office: (215) 616-6428 Mobile: (925) 286-0769 [email protected]<mailto:[email protected]> http://www.iconplc.com/
Quoted reply history
From: [email protected] [mailto:[email protected]] On Behalf Of Bill Denney Sent: Friday, June 08, 2018 1:49 PM To: Mark Tepeck Cc: [email protected] Subject: RE: [NMusers] Cleaning Up After NONMEM Hi Mark, To totally avoid them, not that I know of (others may know an option that can help there). With PsN, you can use -clean=4, and I think it will remove everything. If you have a run with a problem, you may end up with no information to troubleshoot it, though. Thanks, Bill From: Mark Tepeck <[email protected]<mailto:[email protected]>> Sent: Friday, June 8, 2018 4:36 PM To: Bill Denney <[email protected]<mailto:[email protected]>> Cc: [email protected]<mailto:[email protected]> Subject: Re: [NMusers] Cleaning Up After NONMEM Hi Bill, Thank you for the tip. Is there anyway to avoid those sub-directories? For example, let NONMEM clean it up automatically? let NONMEM run those temporary files in another cache space invisible to end-users. Those sub-directories increasingly eats a lot of my disk space. Mark On Fri, Jun 8, 2018 at 3:56 PM, Bill Denney <[email protected]<mailto:[email protected]>> wrote: Hi Mark, The simplest answer that I know of is to use PsN https://uupharmacometrics.github.io/PsN/). It runs NONMEM in a subdirectory and will only bring the most useful files back into the main directory. Thanks, Bill From: [email protected]<mailto:[email protected]> <[email protected]<mailto:[email protected]>> On Behalf Of Mark Tepeck Sent: Friday, June 8, 2018 3:43 PM To: [email protected]<mailto:[email protected]> Subject: Re: [NMusers] FW: testing nmusers number 12001. Please ignore Hi All, Is there any native way for NONMEM to opt out of generating running file/folders. Right now, I use some tools to post clean the NONMEM run directory. However, it will be fantastic to have such a NONMEM built-in option to run "cleanly". Those temporary files and folders create heavy burdens on storing and sharing the results. Thank you, Mark
Jun 08, 2018 Bill Denney RE: Cleaning Up After NONMEM
Jun 08, 2018 Mark Tepeck Re: Cleaning Up After NONMEM
Jun 08, 2018 Robert Bauer RE: Cleaning Up After NONMEM
Jun 10, 2018 Mark Tepeck Re: Cleaning Up After NONMEM