RE: Cleaning Up After NONMEM
Mark:
You can create a batch file, such as nmfe74_cleanup.bat (or whatever name you
wish), with contents such as
call nmfe74.bat %*
del *.set
which will run the original nonmem script (and all arguments are passed with
%*), and when done, go on to delete whichever files you wish.
Robert J. Bauer, Ph.D.
Senior Director
Pharmacometrics R&D
ICON Early Phase
820 W. Diamond Avenue
Suite 100
Gaithersburg, MD 20878
Office: (215) 616-6428
Mobile: (925) 286-0769
[email protected]<mailto:[email protected]>
http://www.iconplc.com/
Quoted reply history
From: [email protected] [mailto:[email protected]] On
Behalf Of Bill Denney
Sent: Friday, June 08, 2018 1:49 PM
To: Mark Tepeck
Cc: [email protected]
Subject: RE: [NMusers] Cleaning Up After NONMEM
Hi Mark,
To totally avoid them, not that I know of (others may know an option that can
help there). With PsN, you can use -clean=4, and I think it will remove
everything. If you have a run with a problem, you may end up with no
information to troubleshoot it, though.
Thanks,
Bill
From: Mark Tepeck <[email protected]<mailto:[email protected]>>
Sent: Friday, June 8, 2018 4:36 PM
To: Bill Denney
<[email protected]<mailto:[email protected]>>
Cc: [email protected]<mailto:[email protected]>
Subject: Re: [NMusers] Cleaning Up After NONMEM
Hi Bill,
Thank you for the tip. Is there anyway to avoid those sub-directories? For
example, let NONMEM clean it up automatically? let NONMEM run those temporary
files in another cache space invisible to end-users. Those sub-directories
increasingly eats a lot of my disk space.
Mark
On Fri, Jun 8, 2018 at 3:56 PM, Bill Denney
<[email protected]<mailto:[email protected]>> wrote:
Hi Mark,
The simplest answer that I know of is to use PsN
https://uupharmacometrics.github.io/PsN/).
It runs NONMEM in a subdirectory and will only bring the most useful files
back into the main directory.
Thanks,
Bill
From: [email protected]<mailto:[email protected]>
<[email protected]<mailto:[email protected]>> On Behalf
Of Mark Tepeck
Sent: Friday, June 8, 2018 3:43 PM
To: [email protected]<mailto:[email protected]>
Subject: Re: [NMusers] FW: testing nmusers number 12001. Please ignore
Hi All,
Is there any native way for NONMEM to opt out of generating running
file/folders. Right now, I use some tools to post clean the NONMEM run
directory. However, it will be fantastic to have such a NONMEM built-in option
to run "cleanly". Those temporary files and folders create heavy burdens on
storing and sharing the results.
Thank you,
Mark