NONMEM installation error on OS X EI Capitan
Dear NMusers,
Recently I upgraded my Mac to OS X EI Capitan, yet this broke the
installation of NONMEM like last year when I upgraded my Mac to Yosemite. I
tried to reinstall NONMEM but with error. The following is how I did.
1) I prefer to take gcc/gfortran binaries from *High Performance Computing
for Mac OS X *( http://hpc.sourceforge.net/)*. *The latest gcc/gfortran 5.2
for EI Capitan were installed by command *sudo tar -xvf gcc-5.2-bin.tar.gz
-C /* and *sudo tar **-xvf gfortran-5.2-bin.tar.gz -C /*. This step was
successful. I tested in terminal by running *gfortran -v*, it showed the
right returns.
2) Then I tried to install NONMEM by command *sudo /bin/bash setup73
[NONMEM source path] [Target path] gfortran y /opt/local/bin/ar same rec i
unzip nonmem73e.zip nonmem73r.zip*.
When it came to *Step 10. Build NONMEM archive nm/nonmem.a*, it showed like
this:
*Step 10. Build NONMEM archive nm/nonmem.a*
*NMTRAN.exe was not created Please look for error messages in
/opt/nm73/compilemsgs.txt and /opt/nm73/finishmsgs.txtInstallation Aborted*
The attachments are *compilemsgs.txt* and *finishmsgs.txt*. I'm not very
clear about the error messages, it seems that there is still something
wrong with gcc/gfortran. There is nothing different in setting gcc/gfortran
this time compare to before. So I have no idea about this issue.
Is there any experience about this problem? And any advice would be
appreciated.
Thanks!
Tingjie
*Tingjie Guo*
M.S. Candidate
Peking University/Pfizer Pharmacometrics Education Centre
Department of Pharmaceutics, School of Pharmaceutical Sciences
Peking University, Beijing, China
/var/tmp//cctEGrMf.s:118:suffix or operands invalid for `movq'
/var/tmp//cctEGrMf.s:119:suffix or operands invalid for `movq'
ar: creating archive nonmem.a
/opt/local/bin/ranlib: file: nonmem.a(BTOOLS4part031.o) has no symbols
nonmem.a has been created
/var/tmp//ccR9zoZV.s:311:suffix or operands invalid for `movq'
/var/tmp//ccR9zoZV.s:431:suffix or operands invalid for `movq'
/var/tmp//ccR9zoZV.s:5348:suffix or operands invalid for `movq'
/var/tmp//ccR9zoZV.s:5364:suffix or operands invalid for `movq'
Undefined symbols for architecture x86_64:
"_getif_", referenced from:
_getstm_ in GETSTM.o
"_libinf_", referenced from:
_genlib_ in GENLIB.o
"_omsig_", referenced from:
_MAIN__ in NMTRAN.o
"_omsig_reorder_", referenced from:
_genera_ in GENERA.o
ld: symbol(s) not found for architecture x86_64
collect2: error: ld returned 1 exit status
NMTRAN.exe has been created
/var/tmp//cc5fWwpp.s:1881:suffix or operands invalid for `movq'
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gfortran: error: finedata.o: No such file or directory
cp: SIG and sig are identical (not copied).
cp: TABLE_TO_XML and table_to_xml are identical (not copied).
cp: TABLE_COMPARE and table_compare are identical (not copied).
cp: XML_COMPARE and xml_compare are identical (not copied).
cp: finedata: No such file or directory
cp: NMTEMPLATE and nmtemplate are identical (not copied).
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install program 1.0 is finished