Implementing a Kalman Filter based optimization in NONMEM
Dear NONMEM users
I am attempting to implement a Kalman Filter based optimization in NONMEM using
$PRED directly. The method I am attempting to implement is similar in spirit
to that presented in Tornoe et. al. (2005) (and the NONMEM 7.3 manual) except
that I have no need for a differential equations solver. In effect I can solve
the differential equations analytically but I still need to estimate a random
walk error term. Adapting the procedure of Tornoe et. al. 2005 seems
straight-forward except that, it seems to me, I need to find a way to store the
state vector and associated partial derivatives at the end of a call to $PRED
and to retrieve them at the beginning of the next call for the same subject. I
assume that something like this must be done by ADVAN6 when differential
equations are solved.
I would be very grateful for any advice on this.
Best
John
Tornoe et. al. Stochastic Differential Equations in NONMEM(r):
Implementation, Application, and Comparison with Ordinary Differential
Equations Pharmaceutical Research, Vol. 22, No. 8, August 2005 2005)
John H. Warner, PhD, MBA
Director, Biostatistics
CHDI Management / CHDI Foundation
155 Village Boulevard, Suite 200
Princeton, NJ, 08540
(609) 945-9644: office
(609) 751-7345: cell
(609) 452-2160: fax
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