RE: single-patient AUC
Shirley,
An interesting new possibility is the xml output. Using the XML package from
CRAN, this can be read in R as follows:
library(XML)
x <- xmlTreeParse("yourmodel.xml", getDTD=F)
r <- xmlRoot(x)
To see what is there:
names(r[['nonmem']][['problem']][['estimation']])
So for example:
xmlValue(r[['nonmem']][['problem']][['estimation']][['final_objective_function']])
Best regards,
Erik
Quoted reply history
________________________________________
From: [email protected] [[email protected]] on behalf of
Hou, Xiaoli Shirley [[email protected]]
Sent: Sunday, September 02, 2012 11:49 PM
To: NONMEM
Subject: RE: [NMusers] single-patient AUC
Dear NM-Users,
I am doing a simulation using R, in which the within and between subject
variations, "EPSILON" and "OMEGA", are needed. They are automatically listed in
the ***.lst file of the NONMEM outputs. Is there a way I can read them from my
NONMEM output into R?
Thanks,
Shirley
Dr. Xiaoli Shirley Hou
Senior Biometrician, ECDS
351 N. Sumneytown Pike, UG1C36
North Wales, PA. 19454.
Phone (540) 381-9599
Fax (267) 305-6395
VoiceMailBox (800) 737-2088 ext 68134
Notice: This e-mail message, together with any attachments, contains
information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station,
New Jersey, USA 08889), and/or its affiliates Direct contact information
for affiliates is available at
http://www.merck.com/contact/contacts.html) that may be confidential,
proprietary copyrighted and/or legally privileged. It is intended solely
for the use of the individual or entity named on this message. If you are
not the intended recipient, and have received this message in error,
please notify us immediately by reply e-mail and then delete it from
your system.