RE: Question Re Calling nmfe7 from R
I think the real underlying issue is that the system environment
variables have not been set for Intel Fortran and Microsoft Visual
Studio. The Intel build environment window is being used to run NONMEM
so R cannot call NONMEM (whether it is just a run or any function of
MIfuns). The NONMEM release CD contains a document that describes how
to set environment variables for Intel Fortran and Microsoft Visual
Studio (NONMEM-PDx-Pop-Support.pdf). Then R or R/MIfuns will be able to
call NONMEM.
William J. Bachman, Ph.D.
Director, Pharmacometrics R&D
Icon Development Solutions
6031 University Blvd., Suite 300
Ellicott City, MD 21043
Office 215-616-8699
[email protected]
Quoted reply history
From: [email protected] [mailto:[email protected]]
On Behalf Of Bill Knebel
Sent: Wednesday, May 04, 2011 12:37 PM
To: Xiao Hu
Cc: [email protected]
Subject: Re: [NMusers] Question Re Calling nmfe7 from R
Shelley,
You may want to consider the R package (MIfuns), developed and released
by Metrum Institute. It is available on CRAN (R package repository) and
via googlecode ( http://code.google.com/p/mifuns/). Using this package
along with the free NONMEM installer (NMQual), also available via
googlecode ( http://code.google.com/p/nmqual/) , will allow you to call
nonmem from R and also provides a complete set of R functions for
performing analyses, preparing data sets, generating and analyzing
bootstraps, and generating post analyses tables and figures. It is more
than just running NONMEM from R so you will likely find it helpful in
the other aspects of data prep and modeling I just mentioned.
Regards,
Bill
On May 4, 2011, at 11:50 AM, Xiao Hu wrote:
Dear NONMEM users,
I recently have NONMEM 7.1.0 upgraded to 7.1.2, which only worked in
Intel Fortran compiler, but not in DOS.
When I tried to call nmfe7 from R, it apparently called DOS command and
failed to run. Is there a way to link nmfe7 to Intel, instead of DOS?
I've been waiting for an answer for my IT rep for two weeks and am
wondering if I can get some guidance from our discussion group.
Best regards,
Shelley
========================================
Xiao Hu (Shelley), Ph.D.
Senior Scientist,
Clinical Pharmacology and Pharmacometrics
Biogen Idec, Inc.
14 Cambridge Center
Cambridge, MA 02142