Re: Automated way to extract NM output
Dear All,
PsN does this quite well. Running the PsN command "execute" on you model
will produce a file called "raw_results.csv" which is an abbreviated
form of the NONMEM output. It is comma separated table with one row for
each $PROBLEM (and each subproblem). The row contains the final
parameter estimates, among other things.
Regards,
Pontus.
mån 2007-10-22 klockan 09:32 +0200 skrev [EMAIL PROTECTED]:
>
> Dear all,
>
> A comment on Xpose - no, support for multiple $PROBLEM statements is
> not present in the current version (4.0PR6U1) - and this is not
> something planned for Census, either, come to that. By a show of
> hands, is this something people would like to see implemented?
>
> Best regards
> Justin Wilkins
> Novartis Pharma AG
> PH346, MODELING & SIMULATION
> CHBS, WSJ-027.1.084
> Novartis Pharma AG
> Lichtstrasse 35
> CH-4056 Basel
> Switzerland
> Phone: +41 61 324 6549
> Fax: +41 61 324 3039
> Mobile: +41 76 561 0949
> Email : [EMAIL PROTECTED]
>
>
>
>
> Nick Holford
> <[EMAIL PROTECTED]>
> Sent by:
> [EMAIL PROTECTED]
>
> 22.10.2007 08:17
>
>
> To
> [email protected]
> cc
>
> Subject
> Re: [NMusers]
> Automated way to
> extract NM output
>
>
>
>
>
>
>
>
> Mahesh,
>
> The 'machinery' behind WFN is awk (actually the GNU gawk).
>
> Did you try running your 500 problem run using WFN? WFN should extract
> the output and summarise it in the *.smy file in the run output
> directory.
>
> If WFN doesn't work please send me your control stream and data so I
> can see what is happening.
>
> Nick
>
> > "Samtani, Mahesh [PRDUS]" wrote:
> >
> > Dear NMusers,
> > I wish to run a $EST NM.ctl with 500 $PROBLEMs. Is there an
> automated way to extract the 500 sets of thetas, omegas, sigmas, and
> minimization statuses from the single output that NONMEM provides? Two
> related questions are: a) What is the machinery that runs behind WFN
> for extracting output after nmbs and b) Xpose31() extracts only a
> single set (I think it is the first set); will downloading the newer
> version of Xpose solve this problem?
> >
> > Kindly advice…Mahesh
> >
>
> --
> Nick Holford, Dept Pharmacology & Clinical Pharmacology
> University of Auckland, 85 Park Rd, Private Bag 92019, Auckland, New
> Zealand
> [EMAIL PROTECTED] tel:+64(9)373-7599x86730 fax:+64(9)373-7090
> www.health.auckland.ac.nz/pharmacology/staff/nholford
>