Hello,
Hope someone can guide me. I am running SAEM/IMP. I can get $TABLE output if I
am using single core. However, whenever I use multiple cores, I couldn't get
the sdtab and patab output from $TABLE (same control stream).
Below is the snip of control stream and error message.
$ESTIMATION METHOD=SAEM AUTO=1 PRINT=10 NBURN=3000 NITER=1000 RANMETHOD=P
$ESTIMATION METHOD=IMP EONLY=1 PRINT=1 NITER=5 ISAMPLE=1000 SEED=12345
MAPITER=0 RANMETHOD=P
$COVARIANCE PRINT=E MATRIX=R
$TABLE ID EVID MDV TIME DV PRED IPRED CWRES ONEHEADER NOAPPEND NOPRINT
FILE=run2.7.sdtab
$TABLE ID TLAG TMAX CMAX FOLD FB ALPHA BETA ETA_TLAG ETA_TMAX ETA_CMAX ETA_FOLD
ETA_ALPHA ETA_BETA ONEHEADER NOAPPEND NOPRINT FIRSTONLY FILE=run2.7.patab
[cid:[email protected]]
Really appreciate your help!
Thanks,
Dongfen
$TABLE issue when using parallel computing and SAEM/IMP
Hi Dongfen,
I cannot remember having problems specifically with the table step. Plenty runs were successful with SAEM/IMP in multi core. Have you tested the control stream without table step to confirm it to be the problem?
It would be better to see the whole control stream. But perhaps… do you have have $ABBR PROTECT included in the beginning?
Best regards,
Jeroen
http://pd-value.com [email protected] @PD_value +31 6 23118438 -- More value out of your data!
Quoted reply history
> Op 2 dec 2024 om 20:14 heeft Yuan, Dongfen [JRDUS] <
>
> [email protected]
>
> > het volgende geschreven:
>
>
> Hello,
>
> Hope someone can guide me. I am running SAEM/IMP. I can get $TABLE output if I am using single core. However, whenever I use multiple cores, I couldn’t get the sdtab and patab output from $TABLE (same control
> stream).
>
> Below is the snip of control stream and error message.
>
> $ESTIMATION METHOD=SAEM AUTO=1 PRINT=10 NBURN=3000 NITER=1000 RANMETHOD=P
>
> $ESTIMATION METHOD=IMP EONLY=1 PRINT=1 NITER=5 ISAMPLE=1000 SEED=12345 MAPITER=0 RANMETHOD=P
>
> $COVARIANCE PRINT=E MATRIX=R
>
> $TABLE ID EVID MDV TIME DV PRED IPRED CWRES ONEHEADER NOAPPEND NOPRINT FILE=run2.7.sdtab
>
> $TABLE ID TLAG TMAX CMAX FOLD FB ALPHA BETA ETA_TLAG ETA_TMAX ETA_CMAX ETA_FOLD ETA_ALPHA ETA_BETA ONEHEADER NOAPPEND NOPRINT FIRSTONLY FILE=run2.7.patab
>
> <image001.png>
>
> Really appreciate your help!
>
> Thanks,
>
> Dongfen
Hi Jeroen and others,
Really appreciate the guidance from the user group!
Either one of the below options works for me:
1. Add $ABBR PROTECT;
2. Add FNLETA=0 to the IMP step.
Thank you so much!
Best regards,
Dongfen
Quoted reply history
From: Jeroen Elassaiss-Schaap (PD-value B.V.) <[email protected]>
Sent: Monday, December 2, 2024 3:40 PM
To: Yuan, Dongfen [JRDUS] <[email protected]>
Cc: [email protected]
Subject: [EXTERNAL] Re: [NMusers] $TABLE issue when using parallel computing
and SAEM/IMP
Hi Dongfen,
I cannot remember having problems specifically with the table step. Plenty runs
were successful with SAEM/IMP in multi core. Have you tested the control stream
without table step to confirm it to be the problem?
It would be better to see the whole control stream. But perhaps… do you have
have $ABBR PROTECT included in the beginning?
Best regards,
Jeroen
http://pd-value.com/
[email protected]<mailto:[email protected]>
@PD_value
+31 6 23118438<tel:+31%206%2023118438>
-- More value out of your data!
Op 2 dec 2024 om 20:14 heeft Yuan, Dongfen [JRDUS]
<[email protected]<mailto:[email protected]>> het volgende geschreven:
Hello,
Hope someone can guide me. I am running SAEM/IMP. I can get $TABLE output if I
am using single core. However, whenever I use multiple cores, I couldn’t get
the sdtab and patab output from $TABLE (same control stream).
Below is the snip of control stream and error message.
$ESTIMATION METHOD=SAEM AUTO=1 PRINT=10 NBURN=3000 NITER=1000 RANMETHOD=P
$ESTIMATION METHOD=IMP EONLY=1 PRINT=1 NITER=5 ISAMPLE=1000 SEED=12345
MAPITER=0 RANMETHOD=P
$COVARIANCE PRINT=E MATRIX=R
$TABLE ID EVID MDV TIME DV PRED IPRED CWRES ONEHEADER NOAPPEND NOPRINT
FILE=run2.7.sdtab
$TABLE ID TLAG TMAX CMAX FOLD FB ALPHA BETA ETA_TLAG ETA_TMAX ETA_CMAX ETA_FOLD
ETA_ALPHA ETA_BETA ONEHEADER NOAPPEND NOPRINT FIRSTONLY FILE=run2.7.patab
<image001.png>
Really appreciate your help!
Thanks,
Dongfen