Hi Everyone:
I am trying to run NONMEM using PsN and I get and
error "No file C:COMBINED_PK_PD_Feb3rd.CSV on disk. at
C:Perlsitelib/PsN_4_2_0/data.pm line 128". The psn.conf file (shown
below) was created automatically during install and seems to have NONMEM
correctly mapped. In the past, I have been able to use PSN with regular
install of NONMEM 7.2 but I am using easy install of NONMEM 7.3 this
time. I wonder if this issue is related to easy install or NONMEM 7.3.
Any help is greatly appreciated.
Thanks,
Best regards,
Ravi
job_polling_interval=1
output_style=SPLUS
[default_bootstrap_options]
bca_confidence_intervals_check=0
bca_confidence_intervals_level=5
covariance_step_successful_limit=0.8
covariance_step_warnings_limit=0.2
estimate_near_boundary_limit=0.2
large_bias_limit=0.05
minimization_successful_limit=0.8
percentile_confidence_intervals_check=0
percentile_confidence_intervals_level=5
se_confidence_intervals_check=0
se_confidence_intervals_level=5
skip_covariance_step_terminated=0
skip_estimate_near_boundary=1
skip_minimization_terminated=1
skip_with_covstep_warnings=0
[default_cdd_options]
outside_n_sd_check=2
xv=0
[default_execute_options]
check_nmtran=1
display_iterations=1
[default_gls_options]
samples=30
[default_lasso_options]
maxevals=50000
retries=5
[default_llp_options]
omega_interval_ratio_check=1.6
sigma_interval_ratio_check=1.6
theta_interval_ratio_check=1.3
within_interval_check=0
[default_options]
nm_output=ext,cov,cor,coi,phi
nmfe=1
threads=5
[default_sumo_options]
c_le
vel=95
condition_number_limit=1000
correlation_limit=0.9
large_omega_cv_limit=0.50
large_sigma_cv_limit=0.30
large_theta_cv_limit=0.30
near_bound_sign_digits=2
near_zero_boundary_limit=0.001
precision=4
sd_rse=1
sign_digits_off_diagonals=2
[nm_versions]
NM73=C:/nm73g64,7.3
default=C:/nm73g64,7.3
PSN error
Hi Ravi,
Personally I prefer to install gcc/gfortran-NONMEM-Perl/Perl modules-PsN
step by step as it's easy to test the error. I notice the error contains
"No file C:\COMBINED_PK_PD_Feb3rd.CSV on disk", please make sure the name
of input file in the $DATA block is in accordance with your data set. If
this can not solve the issue, from my own experiences, you may check if
Perl configuration is corrupted or not and reinstall PsN independently.
Sincerely,
--
*Ting-Jie GUO*
M.S. Candidate
Group of Pharmacometrics
School of Pharmaceutical Sciences
Peking University, China
Quoted reply history
On 7 February 2015 at 00:22, Singh,Ravi Shankar <[email protected]> wrote:
> Hi Everyone:
>
> I am trying to run NONMEM using PsN and I get and error "No file
> C:\COMBINED_PK_PD_Feb3rd.CSV on disk. at C:\Perl\site\lib/PsN_4_2_0/
> data.pm line 128". The psn.conf file (shown below) was created
> automatically during install and seems to have NONMEM correctly mapped. In
> the past, I have been able to use PSN with regular install of NONMEM 7.2
> but I am using easy install of NONMEM 7.3 this time. I wonder if this issue
> is related to easy install or NONMEM 7.3. Any help is greatly appreciated.
>
> Thanks,
>
> Best regards,
>
> Ravi
>
>
>
>
>
>
>
> job_polling_interval=1
> output_style=SPLUS
>
> [default_bootstrap_options]
> bca_confidence_intervals_check=0
> bca_confidence_intervals_level=5
> covariance_step_successful_limit=0.8
> covariance_step_warnings_limit=0.2
> estimate_near_boundary_limit=0.2
> large_bias_limit=0.05
> minimization_successful_limit=0.8
> percentile_confidence_intervals_check=0
> percentile_confidence_intervals_level=5
> se_confidence_intervals_check=0
> se_confidence_intervals_level=5
> skip_covariance_step_terminated=0
> skip_estimate_near_boundary=1
> skip_minimization_terminated=1
> skip_with_covstep_warnings=0
>
> [default_cdd_options]
> outside_n_sd_check=2
> xv=0
>
> [default_execute_options]
> check_nmtran=1
> display_iterations=1
>
> [default_gls_options]
> samples=30
>
> [default_lasso_options]
> maxevals=50000
> retries=5
>
> [default_llp_options]
> omega_interval_ratio_check=1.6
> sigma_interval_ratio_check=1.6
> theta_interval_ratio_check=1.3
> within_interval_check=0
>
> [default_options]
> nm_output=ext,cov,cor,coi,phi
> nmfe=1
> threads=5
>
> [default_sumo_options]
> c_level=95
> condition_number_limit=1000
> correlation_limit=0.9
> large_omega_cv_limit=0.50
> large_sigma_cv_limit=0.30
> large_theta_cv_limit=0.30
> near_bound_sign_digits=2
> near_zero_boundary_limit=0.001
> precision=4
> sd_rse=1
> sign_digits_off_diagonals=2
>
> [nm_versions]
> NM73=C:/nm73g64,7.3
> default=C:/nm73g64,7.3
>
>
>
>
Hi Ravi,
Does the file "C:\COMBINED_PK_PD_Feb3rd.CSV" exist? I'm guessing that you
didn't mean to load the file from the root directory of your C: drive. Check
the file location in your model file.
Thanks,
Bill
Quoted reply history
On Feb 6, 2015, at 11:55, "Singh,Ravi Shankar"
<[email protected]<mailto:[email protected]>> wrote:
Hi Everyone:
I am trying to run NONMEM using PsN and I get and error "No file
C:\COMBINED_PK_PD_Feb3rd.CSV on disk. at C:\Perl\site\lib/PsN_4_2_0/data.pm
line 128". The psn.conf file (shown below) was created automatically during
install and seems to have NONMEM correctly mapped. In the past, I have been
able to use PSN with regular install of NONMEM 7.2 but I am using easy install
of NONMEM 7.3 this time. I wonder if this issue is related to easy install or
NONMEM 7.3. Any help is greatly appreciated.
Thanks,
Best regards,
Ravi
job_polling_interval=1
output_style=SPLUS
[default_bootstrap_options]
bca_confidence_intervals_check=0
bca_confidence_intervals_level=5
covariance_step_successful_limit=0.8
covariance_step_warnings_limit=0.2
estimate_near_boundary_limit=0.2
large_bias_limit=0.05
minimization_successful_limit=0.8
percentile_confidence_intervals_check=0
percentile_confidence_intervals_level=5
se_confidence_intervals_check=0
se_confidence_intervals_level=5
skip_covariance_step_terminated=0
skip_estimate_near_boundary=1
skip_minimization_terminated=1
skip_with_covstep_warnings=0
[default_cdd_options]
outside_n_sd_check=2
xv=0
[default_execute_options]
check_nmtran=1
display_iterations=1
[default_gls_options]
samples=30
[default_lasso_options]
maxevals=50000
retries=5
[default_llp_options]
omega_interval_ratio_check=1.6
sigma_interval_ratio_check=1.6
theta_interval_ratio_check=1.3
within_interval_check=0
[default_options]
nm_output=ext,cov,cor,coi,phi
nmfe=1
threads=5
[default_sumo_options]
c_level=95
condition_number_limit=1000
correlation_limit=0.9
large_omega_cv_limit=0.50
large_sigma_cv_limit=0.30
large_theta_cv_limit=0.30
near_bound_sign_digits=2
near_zero_boundary_limit=0.001
precision=4
sd_rse=1
sign_digits_off_diagonals=2
[nm_versions]
NM73=C:/nm73g64,7.3
default=C:/nm73g64,7.3