Hello,
I am a system administrator with the Center for Research Informatics,
Biological Sciences Division, of the University of Chicago. We have a High
Performance Computing cluster using Red Hat Enterprise Linux 6. We desire to
use NONMEM with PsN and cPirana at the Linux command line for single node and
MPI jobs using ifort 14.
I am here to network with similar site with this type of installation. Also, I
hope to see if there are any other users of NONMEM at the University of Chicago
who may be interested in using this on the cluster as well as your lab’s
stand-alone workstation license.
My first question for this list is…
Does nmfe73 have to be in a directory that is write-able?
I am looking forward to working with you all.
Thanks
Beth Lynn Eicher
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NONMEM on HPC at the University of Chicago
Hi Beth,
NONMEM executable directory doesn't not need to be writable. Just make sure the
key directories (~/nm73/run; ~/nm73/tr) as well as the fortran compiler are in
the system's PATH and you should be fine.
Best of Luck,
Cheng Chang, Ph.D.
Systems Modeling & Simulation
Department of Pharmacokinetics, Dynamics and Metabolism Pfizer Inc.
Groton, CT
(860) 686-9240
Quoted reply history
-----Original Message-----
From: [email protected] [mailto:[email protected]] On
Behalf Of Eicher, Beth L [CRI]
Sent: Monday, September 26, 2016 1:17 PM
To: [email protected]
Subject: [NMusers] NONMEM on HPC at the University of Chicago
Hello,
I am a system administrator with the Center for Research Informatics,
Biological Sciences Division, of the University of Chicago. We have a High
Performance Computing cluster using Red Hat Enterprise Linux 6. We desire to
use NONMEM with PsN and cPirana at the Linux command line for single node and
MPI jobs using ifort 14.
I am here to network with similar site with this type of installation. Also, I
hope to see if there are any other users of NONMEM at the University of Chicago
who may be interested in using this on the cluster as well as your lab's
stand-alone workstation license.
My first question for this list is...
Does nmfe73 have to be in a directory that is write-able?
I am looking forward to working with you all.
Thanks
Beth Lynn Eicher
********************************************************************************
This e-mail is intended only for the use of the individual or entity to which
it is addressed and may contain information that is privileged and confidential.
If the reader of this e-mail message is not the intended recipient, you are
hereby notified that any dissemination, distribution or copying of this
communication is prohibited. If you have received this e-mail in error, please
notify the sender and destroy all copies of the transmittal.
Thank you
University of Chicago Medicine and Biological Sciences
********************************************************************************