Does anyone have any experience getting parallel NONMEM to run with the latest
Microsoft MPI (version 10)?
https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi
Microsoft MPI - Message Passing Interface | Microsoft
https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi
docs.microsoft.com
Microsoft MPI. 03/28/2018; 2 minutes to read; Contributors. In this article.
Microsoft MPI (MS-MPI) is a Microsoft implementation of the Message Passing
Interface standard for developing and running parallel applications on the
Windows platform.. MS-MPI offers several benefits:
we need to run this for another parallel application, and when we installed it,
it broke parallel NONMEM. We're using Intel Fortran, 64 bit Window Server
(2012).
thanks
Mark Sale M.D.
Senior Vice President, Pharmacometrics
Nuventra Pharma Sciences, Inc.
2525 Meridian Parkway, Suite 200
Durham, NC 27713
Phone (919)-973-0383
[email protected]<[email protected]>
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Microsoft MPI
Hi Mark,
Last time I tried this (2016, Windows 8 64-bit), NONMEM needed some
convincing:
1) You have to copy over the right object files from Microsoft MPI into the
NONMEM mpi link directory mpi\mpi_wini; _and_ change the nmfe compiler call
to include the right Microsoft MPI libraries. This should allow you to
compile a nonmem executable using the Microsoft MPI libraries.
2) You need to launch nonmem with the right wrapper (I think it was mpiexec)
3) You have to configure firewall rules to allow local communication for
MPI. This may be tricky, as windows detects each nonmem.exe as a different
executable with different firewall rules. If I remember correctly, this is
where I got stuck last time.
It *did* work however when deactivating the Windows Firewall.
Hopefully these vague pointers can help you; I unfortunately did not retain
my notes.
If you get it working, it would be worthwhile to document this process for
the community! My suggestions to link to Microsoft MPI by default (as
mpich2 is hopelessly outdates) were not high on ICON's priority list.
Best regards,
Ruben
Quoted reply history
On Tue, Apr 16, 2019 at 5:50 PM Mark Sale <[email protected]> wrote:
> Does anyone have any experience getting parallel NONMEM to run with the
> latest Microsoft MPI (version 10)?
>
> https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi
> Microsoft MPI - Message Passing Interface | Microsoft Docs
> https://docs.microsoft.com/en-us/message-passing-interface/microsoft-mpi
> docs.microsoft.com
> Microsoft MPI. 03/28/2018; 2 minutes to read; Contributors. In this
> article. Microsoft MPI (MS-MPI) is a Microsoft implementation of the
> Message Passing Interface standard for developing and running parallel
> applications on the Windows platform.. MS-MPI offers several benefits:
>
>
>
> we need to run this for another parallel application, and when we
> installed it, it broke parallel NONMEM. We're using Intel Fortran, 64 bit
> Window Server (2012).
>
>
> thanks
>
>
>
> Mark Sale M.D.
>
> Senior Vice President, Pharmacometrics
>
> Nuventra Pharma Sciences, Inc.
> 2525 Meridian Parkway, Suite 200
> Durham, NC 27713
>
> Phone (919)-973-0383
>
> [email protected] http://[email protected]
>
>
>
> *Join Nuventra at upcoming events:*
>
> AAPS https://www.nuventra.com/resources/events/aaps-pharmsci-360/ |
> November 4-7 | Washington, DC | Booth #701
>
> The Path to IND
> https://www.nuventra.com/resources/events/webinar-the-path-to-ind/ |
> Webinar | November 14 | 1pm-2pm
>
>
>
> *Check out our latest* blog post
> https://www.nuventra.com/resources/blog/*.*
>
>
> CONFIDENTIALITY NOTICE The information in this transmittal (including
> attachments, if any) may be privileged and confidential and is intended
> only for the recipient(s) listed above. Any review, use, disclosure,
> distribution or copying of this transmittal, in any form, is prohibited
> except by or on behalf of the intended recipient(s). If you have received
> this transmittal in error, please notify me immediately by reply email and
> destroy all copies of the transmittal.
>
>