Hello everyone,
Just want to get some opinion on the issue of different versions of MPICH2
to work with NONMEM 7.2. Our Linux cluster already has a MPICH2 in the
latest version 3.0.4. But we haven't been able to make it work with NONMEM
7.2 and getting the "Exit code: 139" error (see below). Dr. Bauer suggests
we go back to the older version (1.2.1p1) that comes with NONMEM CD. Our
engineer is still working on it and it seems it would be much easier for us
if we can make NONMEM work with the new version of MPICH2. Just wonder if
anyone has made any newer version of MPICH2 work with NONMEM. Appreciate
any comment.
Thanks
Jun Shen,
Vertex Pharmaceuticals
===================================================================================
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= EXIT CODE: 139
= CLEANING UP REMAINING PROCESSES
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
===================================================================================
YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
(signal 11)
This typically refers to a problem with your application.
Please see the FAQ page for debugging suggestions
Different versions of MPICH2 for NONMEM
Jun,
We use mpich2 version 3.0.2 with Ubuntu linux and Intel Fortran version 12
with NONMEM 7.2. You will want to make sure that you are pointing to the
correct mpiexec in your NONMEM pnm file. Also, make sure that you replace
the libmpich.a in the NONMEM mpi/mpi_lini directory with the version from
your lib directory in your mpich2 install.
Bill
Metrum Research Group
Quoted reply history
On Thu, Jun 27, 2013 at 5:51 PM, Jun Shen <[email protected]> wrote:
> Hello everyone,
>
> Just want to get some opinion on the issue of different versions of MPICH2
> to work with NONMEM 7.2. Our Linux cluster already has a MPICH2 in the
> latest version 3.0.4. But we haven't been able to make it work with NONMEM
> 7.2 and getting the "Exit code: 139" error (see below). Dr. Bauer suggests
> we go back to the older version (1.2.1p1) that comes with NONMEM CD. Our
> engineer is still working on it and it seems it would be much easier for us
> if we can make NONMEM work with the new version of MPICH2. Just wonder if
> anyone has made any newer version of MPICH2 work with NONMEM. Appreciate
> any comment.
>
> Thanks
>
> Jun Shen,
> Vertex Pharmaceuticals
>
>
> ===================================================================================
>
> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
>
> = EXIT CODE: 139
>
> = CLEANING UP REMAINING PROCESSES
>
> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
>
>
> ===================================================================================
>
> YOUR APPLICATION TERMINATED WITH THE EXIT STRING: Segmentation fault
> (signal 11)
>
> This typically refers to a problem with your application.
>
> Please see the FAQ page for debugging suggestions
>
>