Continue bootstrap in PsN with more samples using same seed

2 messages 2 people Latest: Aug 24, 2010

Continue bootstrap in PsN with more samples using same seed

From: Nele Kaessner Date: August 24, 2010 technical
Dear all I have a problem running a bootstrap in PsN. I originally ran a bootstrap with the following command: bootstrap --nm_version=6 -samples=100 -dir=bootstrap -seed=12345 -stratify_on=TYPE -run_on_sge -threads=100 psn.mod That worked fine. Now I wanted to increase the samples to 1000, but of course would like to use the first 100 that have already run. Changing the command to bootstrap --nm_version=6 -samples=1000 -dir=bootstrap -seed=12345 -stratify_on=TYPE -run_on_sge -threads=100 psn.mod produced the following error: Fatal Error: The number of samples saved in previous run (100) is smaller than the number of samples specified for this run (1000) Does anybody know if there is a way to continue bootstrapping with the same seed and being able to use the previous runs? Best and thanks Nele ______________________________________________________________ Dr. Nele Käßner PK/PD Sciences Modelling and Simulation (RDP/MS) Nycomed GmbH Byk-Gulden-Str. 2 D-78467 Konstanz, Germany Fon: (+49) 7531 / 84 - 4759 Fax: (+49) 7531 / 84 - 94759 mailto: [email protected]<mailto:[email protected]> http://www.nycomed.com/ County Court: Freiburg, Commercial Register HRB 701257 Chairman Supervisory Board: Charles Depasse Management Board: Stefan Brinkmann, Dr. Frederik Bendiksen, Gilbert Rademacher, Dr. Rainer Wiartalla -------------------------------------------------------------------- The content of this email and of any files transmitted may contain confidential, proprietary or legally privileged information and is intended solely for the use of the person/s or entity/ies to whom it is addressed. If you have received this email in error you have no permission whatsoever to use, copy, disclose or forward all or any of its contents. Please immediately notify the sender and thereafter delete this email and any attachments.

RE: Continue bootstrap in PsN with more samples using same seed

From: William Bachman Date: August 24, 2010 technical
You may have better luck with this question on the PsN List: Send Psn-general mailing list submissions to [email protected] To subscribe or unsubscribe via the World Wide Web, visit https://lists.sourceforge.net/lists/listinfo/psn-general https://lists.sourceforge.net/lists/listinfo/psn-general or, via email, send a message with subject or body 'help' to [email protected] You can reach the person managing the list at [email protected] When replying, please edit your Subject line so it is more specific than "Re: Contents of Psn-general digest..." _____
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From: [email protected] [mailto:[email protected]] On Behalf Of Kaessner, Nele Sent: Tuesday, August 24, 2010 2:25 AM To: [email protected] Subject: [NMusers] Continue bootstrap in PsN with more samples using same seed Dear all I have a problem running a bootstrap in PsN. I originally ran a bootstrap with the following command: bootstrap --nm_version=6 -samples=100 -dir=bootstrap -seed=12345 -stratify_on=TYPE -run_on_sge -threads=100 psn.mod That worked fine. Now I wanted to increase the samples to 1000, but of course would like to use the first 100 that have already run. Changing the command to bootstrap --nm_version=6 -samples=1000 -dir=bootstrap -seed=12345 -stratify_on=TYPE -run_on_sge -threads=100 psn.mod produced the following error: Fatal Error: The number of samples saved in previous run (100) is smaller than the number of samples specified for this run (1000) Does anybody know if there is a way to continue bootstrapping with the same seed and being able to use the previous runs? Best and thanks Nele ______________________________________________________________ Dr. Nele Käßner PK/PD Sciences Modelling and Simulation (RDP/MS) Nycomed GmbH Byk-Gulden-Str. 2 D-78467 Konstanz, Germany Fon: (+49) 7531 / 84 - 4759 Fax: (+49) 7531 / 84 - 94759 mailto: <mailto:[email protected]> [email protected] http://www.nycomed.com/ http://www.nycomed.com County Court: Freiburg, Commercial Register HRB 701257 Chairman Supervisory Board: Charles Depasse Management Board: Stefan Brinkmann, Dr. Frederik Bendiksen, Gilbert Rademacher, Dr. Rainer Wiartalla -------------------------------------------------------------------- The content of this email and of any files transmitted may contain confidential, proprietary or legally privileged information and is intended solely for the use of the person/s or entity/ies to whom it is addressed. If you have received this email in error you have no permission whatsoever to use, copy, disclose or forward all or any of its contents. Please immediately notify the sender and thereafter delete this email and any attachments.