RE: VPCs confidence intervals?
Hi All,
I know what Bill is trying to say but it is not quite accurate the way he
states it.
A prediction interval makes inference on a statistic based on a future sample
such as a sample mean of a future set of data. In contrast, a confidence
interval makes inference on a parameter such as the population mean which is a
fixed number. A prediction interval takes into account both the uncertainty in
the existing data used to estimate the population parameter as well as the
sampling variation to make inference on a sample statistic (e.g., sample mean
for a future trial). A confidence interval only takes into account the
uncertainty in the existing data used to estimate the parameter. Based on the
Law of Large Numbers, the population mean can be thought of as taking the
sample mean of an infinite sample size (i.e., sampling the entire population).
For this reason, a prediction interval with an infinite sample size will
collapse to a confidence interval.
An interval based on VPCs is more akin to a prediction interval since it takes
into account the sampling variation based on a finite sample size, however, one
cannot assign a valid coverage probability (confidence level) to this interval
unless it also takes into account the parameter uncertainty. With VPCs applied
to existing data (i.e, an internal VPC) it is customary to not take into
account this parameter uncertainty so many refer to such prediction intervals
as degenerate as they place 100% certainty on the model parameter estimates
used to obtain the VPC predictions. One could potentially call these
intervals ‘degenerate prediction intervals’ but I tend to just call them ‘VPC
intervals’ (e.g., a 90% VPC interval) so as to avoid misperception that these
prediction intervals have a statistically valid coverage probability. However,
when VPCs are applied to an independent dataset not used in the development of
the model, it is often advised to take into account the parameter uncertainty
when performing the VPCs to essentially reflect the trial-to-trial uncertainty
of the independent data not used in the estimation of model (i.e., refitting
the same model to a new set of trial data will not give the same set of
estimates and hence reflects trial-to-trial variation). In this setting, where
the VPCs take into account both the parameter uncertainty and sampling
variation to predict on an independent (e.g., future) dataset, then one is on
more solid ground to refer to these VPC intervals as prediction intervals with
valid coverage probabilities.
Kind regards,
Ken
Kenneth G. Kowalski
Kowalski PMetrics Consulting, LLC
Email: <mailto:[email protected]> [email protected]
Cell: 248-207-5082
Quoted reply history
From: [email protected] [mailto:[email protected]] On
Behalf Of Bill Denney
Sent: Thursday, March 14, 2019 1:10 PM
To: Soto, Elena <[email protected]>; [email protected]
Subject: RE: [NMusers] VPCs confidence intervals?
Hi Elena,
VPCs are accurately called prediction intervals not confidence intervals. The
difference is that a prediction interval shows what you would expect for the
next individual in a study while a confidence interval shows what you would
expect for the result of a statistic (often confidence intervals of a mean are
shown). With many VPCs, the confidence interval of the median and the
confidence interval of the 5th and 95th percentiles are shown.
Also, when the lines indicate the median, 5th, and 95th percentiles of the
simulations, that is the 90% prediction interval since it is the middle 90% of
the data (not the 95% confidence interval).
Thanks,
Bill
From: [email protected] <mailto:[email protected]>
<[email protected] <mailto:[email protected]> > On Behalf
Of Soto, Elena
Sent: Thursday, March 14, 2019 12:49 PM
To: [email protected]
Subject: [NMusers] VPCs confidence intervals?
Dear all,
I have a question regarding visual predictive checks (VPCs).
Most of VPCs used now, include a line representing the median and 5th and 95th
percentiles of the data values and an area around the same percentiles that is
commonly define as the 95% confidence interval (of the simulations).
But is it correct, from the statistical point of view, to call confidence
interval to this area? And if this is not the case how should we define them?
Thanks,
Elena Soto
Elena Soto, PhD
Pharmacometrician
Pharmacometrics, Global Clinical Pharmacology
Global Product Development
Pfizer R&D UK Limited, IPC 096
CT13 9NJ, Sandwich, UK
Phone : +44 1304 644883
_____
Unless expressly stated otherwise, this message is confidential and may be
privileged. It is intended for the addressee(s) only. Access to this e-mail by
anyone else is unauthorised. If you are not an addressee, any disclosure or
copying of the contents of this e-mail or any action taken (or not taken) in
reliance on it is unauthorised and may be unlawful. If you are not an
addressee, please inform the sender immediately.
Pfizer R&D UK Limited is registered in England under No. 11439437 with its
registered office at Ramsgate Road, Sandwich, Kent CT13 9NJ
---
This email has been checked for viruses by Avast antivirus software.
https://www.avast.com/antivirus