Failure to execute NONMEM from R

From: Ka Ho Hui Date: December 21, 2017 technical Source: mail-archive.com
Dear NMusers, Recently I need to execute NONMEM 7.4 from Rstudio terminal. I have tried the following scripts: 1. `system2("execute FIT_01.mod")` #Through PsN, using `system2` 2. `shell("execute FIT_01.mod")` #Through PsN, using `shell` 3. `write("execute FIT_01.mod", "FIT_01.bat")` `shell("FIT_01.bat")` #Through PsN, using `shell` to call a batch file 4. `write("execute FIT_01.mod", "FIT_01.bat")` `shell.exec("FIT_01.bat")` #Through PsN, using `shell.exec` to call a batch file 5. The above commands, but call through C:/nm74g64/run/nmfe74.bat directly The above were also tested using the test dataset `CONTROL5` Results: 1. gave me the `running command '"execute FIT_01.mod"' had status 127` warning without any execution (2)-(4) gave me the following messages: Starting 1 NONMEM executions. 1 in parallel. S:1 .. All executions started. Starting NMTRAN NMtran failed. There is no output for model 1. Contents of FMSG: Not restarting this model. F:1 .. execute done (5) similar to (1) but the status/error code became 107 None of the above has led to a successful NONMEM run. But the above command lines work when outside R (i.e. through `cmd` +/- PsN) Is there anyone experiencing the same issue? System/software info: OS: Windows 10 NONMEM v7.4 R3.4.2 Rstudio v1.1.383 Best regards, Matthew Hui PhD Student School of Pharmacy Faculty of Medicine The Chinese University of Hong Kong
Dec 21, 2017 Ka Ho Hui Failure to execute NONMEM from R
Dec 21, 2017 Bill Denney Re: Failure to execute NONMEM from R
Dec 21, 2017 Devin Pastoor Re: Failure to execute NONMEM from R
Dec 21, 2017 Tarj Sahota Re: Failure to execute NONMEM from R
Dec 22, 2017 Ka Ho Hui RE: Failure to execute NONMEM from R
Jan 02, 2018 Mike K Smith RE: Failure to execute NONMEM from R
Jan 02, 2018 Robert Bauer RE: Failure to execute NONMEM from R