RE: Gfortran problems in yosemite
Hi Adedeji,
This could happen if the "temp_dir" folder is present and still contains output from a previous run with the previous compiler; the temporary folder may be emptied.
I hope this helps,
Erik
Quoted reply history
________________________________
From: owner-nmusers_at_globomaxnm.com [owner-nmusers_at_globomaxnm.com] on behalf of Adedeji Majekodunmi [majeko_at_hotmail.com]
Sent: Monday, February 22, 2016 6:21 PM
To: nmusers_at_globomaxnm.com
Subject: [NMusers] Gfortran problems in yosemite
Hi All,
I would be most grateful for any assistance with the following issues with NONMEM.
I'm using a mac (2012) and I've just recently upgraded to yosemite. The problem is that NONMEM has stopped running on my laptop since upgrading. This is fairly typical after an upgrade in mac and is usually a problem with gfortran compatibility which should normally be resolved by uninstalling and re-installing gfortran with the following command:
sudo rm -r/usr/local/gfortran/usr/local/bin/gfortran
I've tried re-installing the 5.2 version of gfortran which is compatible with yosemite ( https://gcc.gnu.org/wiki/GFortranBinaries#MacOS<redir.aspx?REF=z77EQi0w4RGD-4PtBbj2gBK2zBQcjtuzSIWPqYkEpJxdXP4qzDvTCAFodHRwczovL2djYy5nbnUub3JnL3dpa2kvR0ZvcnRyYW5CaW5hcmllcyNNYWNPUw..>).
I then tried running NONMEM but I'm getting the following errors:
WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1
(WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.
(WARNING 13) WITH USER-WRITTEN PRED OR $PRED, NM-TRAN CANNOT APPEND THE
MDV DATA ITEM.
Note: The following floating-point exceptions are signalling: IEEE_INVALID_FLAG IEEE_DIVIDE_BY_ZERO
Recompiling certain components
MUMODEL.f90:67:10:
USE FSIZES, ONLY: F_PC,F_PG,F_LVO,F_LVS
1
Fatal Error: Cannot read module file fsizes.mod opened at (1), because it was created by a different version of GNU Fortran
compilation terminated.
PRPNM.f90:58:10:
USE PNM_CONFIG, ONLY: PNM_UPAR,M_IDEFD,M_IDEFA,M_EL,M_TQ,M_DAC,M_DPC
1
Fatal Error: Cannot read module file pnm_config.mod opened at (1), because it was created by a different version of GNU Fortran
compilation terminated.
Building NONMEM Executable
gfortran: error: temp_dir/MUMODEL.o: No such file or directory
gfortran: error: temp_dir/PRPNM.o: No such file or directory
No nonmem execution.
It appears there are still problems with gfortran. Would anyone be kind enough to assist?
My other question: Is there a way to prevent future upgrades on the mac interfering with NONMEM?
Kind Regards,
Adedeji
PhD student, UCL.