Funny behaviour with MCETA>1 and parallel computation
Dear all,
I am working with FOCE-INTERACTION and a PK model with some issues in
optimising the individual ETAs.
A couple of subjects in the dataset are very fast absorbers and
sometimes NONMEM fails to find the optimal value for their individual
ETAs. This results in the OFV randomly jumping up a lot (~100 points)
when I restart the model from the final estimates of a previous run. The
model may sometimes find its way back to the same minimum, but not always.
So I decided to use the new feature MCETA, which is supposed to address
these kinds of issues by trying several randomly generated sets of
initial ETAs, increasing the chance of finding the best value of
individual ETA for each subject.
I first tested the new feature on a single CPU and everything worked as
expected: using MCETA=0 (the default) the OFV jumps up after restarting
with the final values, while with MCETA=5 the problem is solved and the
OFV is stable.
I then ran the same test using the parallel computation feature to speed
it up, but I noticed that here the OFV was jumping up anyway. Not only,
using MCETA=5 was actually giving a WORSE OFV than the default value of
MCETA=0, which is indeed giving the same result irrespectively of
whether I use the parallel computation or not.
I have retried several times to make sure I hadn't made any mistakes and
when I use MCETA>1 and the parallel computation feature, it sometimes
perform worse than the default MCETA=0. I tried other values of MCETA
too, but same story.
When I say that the OFV goes up, I am referring to the first iteration,
so I have replicated these results using MAXEVAL=0.
Any suggestion about what may be going on? My understanding is that
using MCETA>1 CANNOT be any worse than the default behaviour (MECTA=0)
of just using 0 as initial value. The guide says NONMEM is supposed to
try both 0 AND some other values as initial estimates, and choose in
every subject the option that minimises the OFV. So in the worst case
scenario NONMEM will just use 0 and I will have wasted some electrons.
Am I misunderstanding something?
Sorry for the lengthy email and thanks for any input on this.
Paolo
--
------------------------------------------------
Paolo Denti, PhD
Pharmacometrics Group
Division of Clinical Pharmacology
Department of Medicine
University of Cape Town
K45 Old Main Building
Groote Schuur Hospital
Observatory, Cape Town
7925 South Africa
phone: +27 21 404 7719
fax: +27 21 448 1989
email: [email protected]
------------------------------------------------
________________________________
UNIVERSITY OF CAPE TOWN
This e-mail is subject to the UCT ICT policies and e-mail disclaimer published
on our website at http://www.uct.ac.za/about/policies/emaildisclaimer/ or
obtainable from +27 21 650 9111. This e-mail is intended only for the person(s)
to whom it is addressed. If the e-mail has reached you in error, please notify
the author. If you are not the intended recipient of the e-mail you may not
use, disclose, copy, redirect or print the content. If this e-mail is not
related to the business of UCT it is sent by the sender in the sender's
individual capacity.