Re: Re: 答复: NONMEM execution problem
Hey Gaurav,
In my opinion, it’s obviously compiler corrupted when you call
gfcomplile.bat.
I suggest you to test gfortran in Dos command
>gfortran
if it shows : no input files, try execute nonmem again.
if not, you may install Gfortran again, set the system environment varible as
path=C:\nm7C\gfortran\bin;C:\nm7C\gfortran.
then test again.
another way might be help. You may install WFN,
Using WFN to link gfortran instead using gfcomplile.bat.
you need to edit wfn.txt and save as wfn.bat
for example:
set NMHOME=C:\nm720
set WFNHOME=C:\nm720\wfn7
rem use this for gfortran compiler
set F77HOME=C:\Program Files\gfortran
set F77VER=gf
good luck!
Kun Wang
Quoted reply history
From: Gaurav Bajaj
Sent: Thursday, September 15, 2011 3:48 AM
To: [email protected]
Subject: [NMusers] Re: 答复: [NMusers] NONMEM execution problem
Dear NONMEM users,
I recently shared a NONMEM 7.2 execution problem with the group which was due
to compiler issues. I figured that it stopped working after I installed
Phoenix. I guess Phoenix uses g77 MinGW compiler which might have corrupted
gfortran, and that may be the reason I am not able to execute NONMEM. I tried
installing g95MinGW as suggested by Chenhui, but its not working either. If
anybody else have faced similar issue, please let me know.
Kind regards,
Gaurav
2011/9/2 邓晨辉 <[email protected]>
Hi Gaurav,
What is your OS? I think it may be the problem of compiler.
Days ago, I encounter a similar problem in a Windows 7 64bit PC.
The way I do to solve the problem is to clean the gfortran install, download a
MinGW for WIN64 gfortran complier and reinstall NONMEM.
Hope this could help you!
Chenhui.
发件人: [email protected] [mailto:[email protected]] 代表
Gaurav Bajaj
发送时间: 2011年9月2日 23:16
收件人: [email protected]
主题: [NMusers] NONMEM execution problem
Hello all,
I am having problem with NONMEM 7.2 execution. I am not sure about the
problem as it was working fine until recently. Could you please suggest any
solution? Here is what I see when I run nm72 example:
---------------------------
C:\Users\bajajg\Desktop\NONMEM run test>nmfe72 example1.ctl example1.out
doing nmtran
WARNINGS AND ERRORS (IF ANY) FOR PROBLEM 1
(WARNING 2) NM-TRAN INFERS THAT THE DATA ARE POPULATION.
CREATING MUMODEL ROUTINE...
1 file(s) copied.
recompiling certain components.
C:\Users\bajajg\AppData\Local\Temp\cc99rPSO.s: Assembler messages:
C:\Users\bajajg\AppData\Local\Temp\cc99rPSO.s:1047: Error: junk at end of
first unrecognized character is `,'
C:\Users\bajajg\AppData\Local\Temp\cc99rPSO.s:1048: Error: junk at end of
first unrecognized character is `,'
.
.
.
.
C:\Users\bajajg\AppData\Local\Temp\ccaviQhi.s:1845: Error: junk at en
first unrecognized character is `,'
C:\Users\bajajg\AppData\Local\Temp\ccaviQhi.s:1846: Error: junk at en
first unrecognized character is `,'
C:\Users\bajajg\AppData\Local\Temp\ccaviQhi.s:1847: Error: junk at en
first unrecognized character is `,'
Finished compiling fsubs
gfortran: error: fsubs.o: No such file or directory
gfortran: error: temp_dir\PRED.o: No such file or directory
gfortran: error: temp_dir\PREDI.o: No such file or directory
gfortran: error: temp_dir\CHECK.o: No such file or directory
gfortran: error: temp_dir\SADVAN.o: No such file or directory
gfortran: error: temp_dir\ADVAN3.o: No such file or directory
gfortran: error: temp_dir\TRANS4.o: No such file or directory
gfortran: error: temp_dir\prglobalp.o: No such file or directory
gfortran: error: temp_dir\mumodel.o: No such file or directory
gfortran: error: temp_dir\prpnm.o: No such file or directory
Completed call to gfcompile.bat
No nonmem execution.
---------------------------------------------------------
Gaurav Bajaj
--
Gaurav Bajaj
Postdoctoral Fellow, Pharmacometrics
Laboratory for Applied PK/PD
Clinical Pharmacology & Therapeutics
The Children's Hospital of Philadelphia