RE: Simulating different populations
From: "Kowalski, Ken" Ken.Kowalski@pfizer.com
Subject: RE: [NMusers] Simulating different populations
Date: Wed, 10 Aug 2005 13:12:09 -0400
Liping,
Just to clarify. I indicated that simulating different sets of population
estimates based on the var-cov matrix from NONMEM and then assuming
multivariate normal and possibly inverse-Wishart (for the variance
parameters in Omega and/or Sigma) distributions for the parameter estimates
is NOT computationally intensive. However, it is laborious to use these
population estimates and feed them back in to NONMEM to perform simulations
that take into account this parameter uncertainty because it requires custom
coding. Based on Marc's comments it sounds like he and others are working
on developing utilities that will automate this process in NONMEM which
would make it a lot easier to do this as a general practice.
If on the other hand we do not wish to make a parametric assumption using
the var-cov matrix and multivariate Normal/Inverse-Wishart distribution we
could perform parametric or nonparametric bootstrap simulations and re-fit
the model in NONMEM for each of say 1000 bootstrap datasets to obtain 1000
estimates of the population parameters from the posterior distribution and
use these in subsequent simulations to account for parameter uncertainty.
This approach IS computationally intensive because of having to re-fit the
model in NONMEM.
My feeling is that it is better to routinely do something to take into
account parameter uncertainty using the var-cov matrix and parametric
assumptions than to doing nothing to take into account parameter
uncertainty. Hopefully, individuals working on utilities to automate this
parametric approach will be able to share them with us.
Ken